Sequence Similarity Clusters for the Entities in PDB 3ZEF

Entity #1 | Chains: A,D
A1 CISTRON-SPLICING FACTOR AAR2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 15970
95 % 6 7 8498 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 2.1
PDBFlex
90 % 6 7 8428
70 % 6 7 7999
50 % 6 7 7346
40 % 6 7 6778
30 % 6 7 5931
Entity #2 | Chains: B,E
PRE-MRNA-SPLICING FACTOR 8 protein, length: 1531 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45730
95 % 2 2 26222 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 2.1
PDBFlex
90 % 2 2 25294
70 % 2 2 20726
50 % 2 2 17840
40 % 2 2 15769
30 % 2 2 13210

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures