Sequence Similarity Clusters for the Entities in PDB 3ZEF

Entity #1 | Chains: A,D
A1 CISTRON-SPLICING FACTOR AAR2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 14905
95 % 6 7 7693 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 2.1
PDBFlex
90 % 6 7 7640
70 % 6 7 7433
50 % 6 7 6848
40 % 6 7 6374
30 % 6 7 5699
Entity #2 | Chains: B,E
PRE-MRNA-SPLICING FACTOR 8 protein, length: 1531 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30800
95 % 2 2 21510 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.9
PDBFlex
90 % 2 2 20893
70 % 2 2 19181
50 % 2 2 16676
40 % 2 2 14888
30 % 2 2 12776

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures