Sequence Similarity Clusters for the Entities in PDB 3ZEF

Entity #1 | Chains: A,D
A1 CISTRON-SPLICING FACTOR AAR2 protein, length: 355 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 16463
95 % 6 7 8753 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 2.1
PDBFlex
90 % 6 7 8672
70 % 6 7 8240
50 % 6 7 7538
40 % 6 7 6948
30 % 6 7 6065
Entity #2 | Chains: B,E
PRE-MRNA-SPLICING FACTOR 8 protein, length: 1531 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46837
95 % 2 2 26940 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 2.1
PDBFlex
90 % 2 2 25958
70 % 2 2 21214
50 % 2 2 18248
40 % 2 2 16125
30 % 2 2 13508

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures