Sequence Similarity Clusters for the Entities in PDB 3ZED

Entity #1 | Chains: A,B,C
RNA-DIRECTED RNA POLYMERASE protein, length: 853 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 1907
95 % 2 5 2485 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 2 5 2548
70 % 2 5 2540
50 % 2 5 2530
40 % 2 10 2095
30 % 2 10 2011
Entity #2 | Chains: D,E,F
CAPSID PROTEIN VP3 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 28279
95 % 1 1 23581
90 % 1 1 22857
70 % 1 1 20941
50 % 1 1 18107
40 % 1 1 16133
30 % 1 1 13792

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures