Sequence Similarity Clusters for the Entities in PDB 3ZED

Entity #1 | Chains: A,B,C
RNA-DIRECTED RNA POLYMERASE protein, length: 853 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 1874
95 % 2 5 2449 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 2 5 2514
70 % 2 5 2505
50 % 2 5 2495
40 % 2 10 2063
30 % 2 10 1983
Entity #2 | Chains: D,E,F
CAPSID PROTEIN VP3 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 27882
95 % 1 1 23256
90 % 1 1 22548
70 % 1 1 20677
50 % 1 1 17897
40 % 1 1 15952
30 % 1 1 13639

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures