Sequence Similarity Clusters for the Entities in PDB 3ZD6

Entity #1 | Chains: A
PROBABLE ATP-DEPENDENT RNA HELICASE DDX58 protein, length: 696 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50584
95 % 7 9 2400 Flexibility: Low
Max RMSD: 8.6, Avg RMSD: 2.8
PDBFlex
90 % 7 9 2466
70 % 7 9 2451
50 % 7 9 2443
40 % 7 9 2421
30 % 10 18 1463
Entity #2 | Chains: C,D
RNA DUPLEX rna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures