Sequence Similarity Clusters for the Entities in PDB 3W99

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 45 323
95 % 131 164 76 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.2
PDBFlex
90 % 134 167 79
70 % 135 168 94
50 % 137 172 122
40 % 137 172 144
30 % 137 172 152
Entity #2 | Chains: B,F
Histone H4 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 13 2109
95 % 11 14 2438 Flexibility: Low
Max RMSD: 6.6, Avg RMSD: 2.2
PDBFlex
90 % 12 15 2424
70 % 12 15 2428
50 % 12 15 2407
40 % 12 15 2382
30 % 12 15 2270
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 47 58 244
95 % 117 156 81 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.6
PDBFlex
90 % 123 164 76
70 % 129 170 88
50 % 139 180 110
40 % 139 180 137
30 % 139 180 142
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 53 269
95 % 117 153 84 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 122 158 86
70 % 128 165 96
50 % 128 165 135
40 % 128 165 150
30 % 128 165 160
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures