Sequence Similarity Clusters for the Entities in PDB 3W99

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 35 322
95 % 112 134 101
90 % 115 137 102
70 % 116 138 104
50 % 118 141 136
40 % 118 141 152
30 % 118 141 173
Entity #2 | Chains: B,F
Histone H4 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 12 1901
95 % 10 13 2338
90 % 11 14 2295
70 % 11 14 2299
50 % 11 14 2293
40 % 11 14 2277
30 % 11 14 2150
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 47 247
95 % 98 123 111
90 % 103 132 104
70 % 107 136 97
50 % 117 146 124
40 % 117 146 142
30 % 117 146 154
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 43 266
95 % 100 122 113
90 % 103 125 116
70 % 108 131 123
50 % 108 131 151
40 % 108 131 170
30 % 108 131 184
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.