Sequence Similarity Clusters for the Entities in PDB 3W99

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 40 323
95 % 120 143 90
90 % 123 146 83
70 % 124 147 101
50 % 126 150 136
40 % 126 150 152
30 % 126 150 169
Entity #2 | Chains: B,F
Histone H4 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 12 2068
95 % 10 13 2545
90 % 11 14 2504
70 % 11 14 2482
50 % 11 14 2440
40 % 11 14 2411
30 % 11 14 2274
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 50 254
95 % 104 129 112
90 % 111 140 84
70 % 117 146 93
50 % 127 156 121
40 % 127 156 139
30 % 127 156 155
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 44 294
95 % 106 128 114
90 % 111 133 113
70 % 117 140 119
50 % 117 140 147
40 % 117 140 162
30 % 117 140 182
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.