Sequence Similarity Clusters for the Entities in PDB 3W99

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 42 311
95 % 124 151 76
90 % 127 154 78
70 % 128 155 93
50 % 130 158 128
40 % 130 158 145
30 % 130 158 160
Entity #2 | Chains: B,F
Histone H4 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 13 1992
95 % 11 14 2329
90 % 12 15 2319
70 % 12 15 2318
50 % 12 15 2299
40 % 12 15 2282
30 % 12 15 2184
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 44 54 252
95 % 110 141 81
90 % 116 149 79
70 % 122 155 89
50 % 132 165 116
40 % 132 165 138
30 % 132 165 150
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 48 270
95 % 110 136 108
90 % 115 141 91
70 % 121 148 100
50 % 121 148 139
40 % 121 148 156
30 % 121 148 172
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.