Sequence Similarity Clusters for the Entities in PDB 3W99

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 38 45 337
95 % 132 166 77 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.2
PDBFlex
90 % 135 169 80
70 % 136 170 94
50 % 138 174 124
40 % 138 174 144
30 % 138 174 151
Entity #2 | Chains: B,F
Histone H4 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 17 1502
95 % 11 18 1912 Flexibility: Low
Max RMSD: 6.6, Avg RMSD: 2.2
PDBFlex
90 % 12 19 1896
70 % 12 19 1915
50 % 12 19 1938
40 % 12 19 1934
30 % 12 19 1865
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 48 60 241
95 % 118 161 78 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.6
PDBFlex
90 % 124 169 75
70 % 130 175 89
50 % 140 185 108
40 % 140 185 130
30 % 140 185 139
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 53 285
95 % 118 155 89 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 123 160 86
70 % 129 167 99
50 % 129 167 136
40 % 129 167 149
30 % 129 167 159
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures