Sequence Similarity Clusters for the Entities in PDB 3W99

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 31 364
95 % 104 122 105
90 % 107 125 103
70 % 107 125 119
50 % 109 128 146
40 % 109 128 159
30 % 109 128 178
Entity #2 | Chains: B,F
Histone H4 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 12 1761
95 % 10 13 2197
90 % 11 14 2166
70 % 11 14 2177
50 % 11 14 2179
40 % 11 14 2163
30 % 11 14 2037
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 38 293
95 % 90 109 115
90 % 95 118 110
70 % 99 122 105
50 % 105 128 135
40 % 105 128 152
30 % 105 128 168
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 35 330
95 % 91 108 120
90 % 94 111 122
70 % 99 117 130
50 % 99 117 157
40 % 99 117 170
30 % 99 117 187
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.