Sequence Similarity Clusters for the Entities in PDB 3W99

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 34 337
95 % 109 130 105
90 % 112 133 105
70 % 113 134 116
50 % 115 137 141
40 % 115 137 156
30 % 115 137 178
Entity #2 | Chains: B,F
Histone H4 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 12 1877
95 % 10 13 2310
90 % 11 14 2267
70 % 11 14 2268
50 % 11 14 2269
40 % 11 14 2258
30 % 11 14 2128
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 45 254
95 % 96 119 113
90 % 101 128 108
70 % 105 132 113
50 % 112 139 128
40 % 112 139 144
30 % 112 139 163
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 40 285
95 % 97 118 116
90 % 100 121 119
70 % 105 127 125
50 % 105 127 153
40 % 105 127 171
30 % 105 127 187
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.