Sequence Similarity Clusters for the Entities in PDB 3W98

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 20709
95 % 9 11 2285
90 % 9 11 2324
70 % 9 11 2322
50 % 11 13 1868
40 % 11 13 1885
30 % 11 13 1799
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 112 121 84
95 % 131 140 83
90 % 136 145 75
70 % 136 145 90
50 % 136 145 129
40 % 136 145 143
30 % 136 145 162
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 45 254
95 % 109 119 112
90 % 117 128 108
70 % 121 132 112
50 % 128 139 128
40 % 128 139 142
30 % 128 139 161
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 39 40 285
95 % 109 118 115
90 % 112 121 118
70 % 118 127 125
50 % 118 127 152
40 % 118 127 169
30 % 118 127 185
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.