Sequence Similarity Clusters for the Entities in PDB 3W98

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 22092
95 % 9 11 2515
90 % 9 11 2563
70 % 9 11 2541
50 % 11 13 2007
40 % 11 13 2007
30 % 11 13 1928
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 123 133 81
95 % 142 152 71
90 % 147 157 73
70 % 147 157 86
50 % 147 157 124
40 % 147 157 141
30 % 147 157 157
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 49 253
95 % 116 128 110
90 % 126 139 87
70 % 132 145 94
50 % 142 155 120
40 % 142 155 139
30 % 142 155 154
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 43 303
95 % 117 127 114
90 % 122 132 113
70 % 129 139 120
50 % 129 139 145
40 % 129 139 161
30 % 129 139 179
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.