Sequence Similarity Clusters for the Entities in PDB 3W98

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39534
95 % 3 4 8223
90 % 3 4 8146
70 % 3 4 7778
50 % 3 4 7089
40 % 3 4 6530
30 % 3 4 5791
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 105 112 85
95 % 123 130 78
90 % 128 135 76
70 % 128 135 92
50 % 128 135 131
40 % 128 135 149
30 % 128 135 166
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 38 39 284
95 % 103 110 115
90 % 111 119 109
70 % 115 123 102
50 % 121 129 134
40 % 121 129 150
30 % 121 129 167
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 36 322
95 % 103 109 120
90 % 106 112 119
70 % 112 118 130
50 % 112 118 157
40 % 112 118 170
30 % 112 118 187
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.