Sequence Similarity Clusters for the Entities in PDB 3W98

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 23378
95 % 10 12 2324
90 % 10 12 2387
70 % 10 12 2379
50 % 12 14 1970
40 % 12 14 1962
30 % 12 14 1892
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 128 142 62
95 % 147 161 74
90 % 152 166 73
70 % 152 166 86
50 % 152 166 122
40 % 152 166 140
30 % 152 166 154
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 54 252
95 % 124 141 81
90 % 132 149 79
70 % 138 155 89
50 % 148 165 116
40 % 148 165 138
30 % 148 165 150
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 47 48 270
95 % 122 136 108
90 % 127 141 91
70 % 134 148 100
50 % 134 148 139
40 % 134 148 156
30 % 134 148 172
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.