Sequence Similarity Clusters for the Entities in PDB 3W98

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 20419
95 % 9 11 2243
90 % 9 11 2281
70 % 9 11 2288
50 % 11 13 1842
40 % 11 13 1858
30 % 11 13 1772
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 117 85
95 % 126 135 78
90 % 131 140 78
70 % 131 140 92
50 % 131 140 130
40 % 131 140 144
30 % 131 140 163
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 41 276
95 % 105 114 112
90 % 113 123 106
70 % 117 127 106
50 % 124 134 129
40 % 124 134 143
30 % 124 134 162
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 38 300
95 % 105 113 116
90 % 108 116 117
70 % 114 122 128
50 % 114 122 155
40 % 114 122 169
30 % 114 122 185
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.