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An Information Portal to 109822 Biological Macromolecular Structures

Crystal Structure of Human Nucleosome Core Particle lacking H3.1 N-terminal region
Sequence Clustering and Redundancy Reduction Results
3W98
Sequence Clusters for the Sequence Entities in PDB 3W98
Entity #1: Chains: A,E - Histone H3.1 protein, length: 112 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 37203
95% 2 2 16107
90% 2 2 15712
70% 2 2 14599
50% 2 2 12782
40% 2 2 11465
30% 2 2 9873
Entity #2: Chains: B,F - Histone H4 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 81 87 101
95% 97 103 122
90% 101 107 124
70% 101 107 139
50% 101 107 164
40% 101 107 181
30% 101 107 197
Entity #3: Chains: C,G - Histone H2A type 1-B/E protein, length: 133 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 22 23 606
95% 79 86 135
90% 84 92 133
70% 87 95 149
50% 93 101 165
40% 93 101 182
30% 93 101 199
Entity #4: Chains: D,H - Histone H2B type 1-J protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 22 673
95% 80 86 136
90% 82 88 145
70% 88 94 153
50% 88 94 186
40% 88 94 201
30% 88 94 217
Entity #5: Chains: I,J - 146-mer DNA dna, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.