Sequence Similarity Clusters for the Entities in PDB 3W98

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 112 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 23932
95 % 10 16 1925 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 10 17 1877
70 % 10 17 1892
50 % 12 19 1642
40 % 12 19 1633
30 % 12 19 1610
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 157 183 55
95 % 160 186 70 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 166 192 71
70 % 166 192 85
50 % 166 192 115
40 % 166 192 137
30 % 166 192 147
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 52 53 330
95 % 135 168 76 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 143 176 75
70 % 149 182 90
50 % 160 193 110
40 % 160 193 132
30 % 160 193 144
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 55 56 277
95 % 134 162 87 Flexibility: No
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 134 162 91
70 % 146 174 99
50 % 146 174 132
40 % 146 174 149
30 % 146 174 163
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures