Sequence Similarity Clusters for the Entities in PDB 3W97

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 35 322
95 % 123 134 101
90 % 126 137 102
70 % 127 138 104
50 % 129 141 136
40 % 129 141 152
30 % 129 141 173
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 111 125 83
95 % 130 144 75
90 % 135 149 74
70 % 135 149 88
50 % 135 149 126
40 % 135 149 145
30 % 135 149 157
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 47 247
95 % 107 123 111
90 % 115 132 104
70 % 119 136 97
50 % 129 146 124
40 % 129 146 142
30 % 129 146 154
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 9531
95 % 9 12 1447
90 % 9 12 1479
70 % 10 13 1331
50 % 10 13 1384
40 % 10 13 1407
30 % 10 13 1386
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.