Sequence Similarity Clusters for the Entities in PDB 3W97

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 35 346
95 % 126 137 105
90 % 129 140 105
70 % 130 141 116
50 % 132 144 139
40 % 132 144 156
30 % 132 144 173
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 128 85
95 % 133 147 76
90 % 138 152 74
70 % 138 152 88
50 % 138 152 127
40 % 138 152 145
30 % 138 152 159
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 42 47 252
95 % 109 125 111
90 % 117 134 107
70 % 123 140 97
50 % 133 150 123
40 % 133 150 140
30 % 133 150 154
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 9847
95 % 9 12 1507
90 % 9 12 1542
70 % 10 13 1368
50 % 10 13 1422
40 % 10 13 1444
30 % 10 13 1419
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.