Sequence Similarity Clusters for the Entities in PDB 3W97

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 34 333
95 % 120 130 105
90 % 123 133 105
70 % 124 134 116
50 % 126 137 141
40 % 126 137 155
30 % 126 137 175
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 108 121 84
95 % 127 140 83
90 % 132 145 75
70 % 132 145 90
50 % 132 145 129
40 % 132 145 143
30 % 132 145 162
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 45 254
95 % 105 119 112
90 % 113 128 108
70 % 117 132 112
50 % 124 139 128
40 % 124 139 142
30 % 124 139 161
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 9339
95 % 9 11 1853
90 % 9 11 1898
70 % 10 12 1606
50 % 10 12 1651
40 % 10 12 1680
30 % 10 12 1625
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.