Sequence Similarity Clusters for the Entities in PDB 3W96

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 31 365
95 % 107 123 104
90 % 110 126 90
70 % 110 126 108
50 % 112 129 145
40 % 112 129 158
30 % 112 129 177
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 94 112 85
95 % 110 130 78
90 % 115 135 76
70 % 115 135 92
50 % 115 135 131
40 % 115 135 149
30 % 115 135 166
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 39 284
95 % 93 110 115
90 % 98 119 109
70 % 102 123 102
50 % 108 129 134
40 % 108 129 150
30 % 108 129 167
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 36 322
95 % 94 109 120
90 % 97 112 119
70 % 102 118 130
50 % 102 118 157
40 % 102 118 170
30 % 102 118 187
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.