Sequence Similarity Clusters for the Entities in PDB 3W96

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 26 32 353
95 % 107 126 106
90 % 110 129 107
70 % 111 130 122
50 % 113 133 145
40 % 113 133 161
30 % 113 133 179
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 96 117 89
95 % 112 135 99
90 % 117 140 84
70 % 117 140 98
50 % 117 140 134
40 % 117 140 146
30 % 117 140 167
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 42 274
95 % 94 115 115
90 % 99 124 109
70 % 103 128 117
50 % 110 135 133
40 % 110 135 145
30 % 110 135 165
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 38 301
95 % 95 114 118
90 % 98 117 119
70 % 103 123 129
50 % 103 123 155
40 % 103 123 171
30 % 103 123 186
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.