Sequence Similarity Clusters for the Entities in PDB 3W96

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 42 296
95 % 126 150 76 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 1.3
PDBFlex
90 % 129 153 77
70 % 130 154 96
50 % 132 157 131
40 % 132 157 146
30 % 132 157 161
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 115 141 75
95 % 132 160 74 Flexibility: Low
Max RMSD: 13.3, Avg RMSD: 1.2
PDBFlex
90 % 137 165 75
70 % 137 165 87
50 % 137 165 122
40 % 137 165 140
30 % 137 165 155
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 54 245
95 % 112 140 86 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 118 148 78
70 % 124 154 90
50 % 134 164 120
40 % 134 164 139
30 % 134 164 152
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 48 265
95 % 112 135 111 Flexibility: Low
Max RMSD: 9.7, Avg RMSD: 0.5
PDBFlex
90 % 117 140 107
70 % 123 147 104
50 % 123 147 140
40 % 123 147 156
30 % 123 147 174
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.