Sequence Similarity Clusters for the Entities in PDB 3W96

Entity #1 | Chains: A,E
Histone H3.1 protein, length: 139 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 34 338
95 % 111 131 105
90 % 114 134 103
70 % 115 135 116
50 % 117 138 140
40 % 117 138 157
30 % 117 138 177
Entity #2 | Chains: B,F
Histone H4 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 100 122 85
95 % 117 141 80
90 % 122 146 73
70 % 122 146 87
50 % 122 146 128
40 % 122 146 144
30 % 122 146 162
Entity #3 | Chains: C,G
Histone H2A type 1-B/E protein, length: 124 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 45 254
95 % 98 120 113
90 % 103 129 106
70 % 107 133 106
50 % 114 140 127
40 % 114 140 143
30 % 114 140 161
Entity #4 | Chains: D,H
Histone H2B type 1-J protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 40 285
95 % 99 119 116
90 % 102 122 116
70 % 107 128 125
50 % 107 128 153
40 % 107 128 171
30 % 107 128 186
Entity #5 | Chains: I,J
146-mer DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.