Sequence Similarity Clusters for the Entities in PDB 3W6J

Entity #1 | Chains: A,D
ScpA protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39320
95 % 1 1 33229 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 1 1 31806
70 % 1 1 28419
50 % 1 1 24291
40 % 1 1 21373
30 % 1 2 14348
Entity #2 | Chains: B,C,E,F
ScpB protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21718
95 % 1 1 19524 Flexibility: High
Max RMSD: 15.6, Avg RMSD: 10.7
PDBFlex
90 % 1 1 18987
70 % 1 1 17466
50 % 1 1 15217
40 % 1 1 13531
30 % 1 1 11371

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures