Sequence Similarity Clusters for the Entities in PDB 3W6J

Entity #1 | Chains: A,D
ScpA protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 43748
95 % 1 1 33074 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 1 1 31601
70 % 1 1 28182
50 % 1 1 24035
40 % 1 1 21145
30 % 1 2 13950
Entity #2 | Chains: B,C,E,F
ScpB protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22435
95 % 1 1 19356 Flexibility: High
Max RMSD: 15.6, Avg RMSD: 10.7
PDBFlex
90 % 1 1 18844
70 % 1 1 17415
50 % 1 1 15112
40 % 1 1 13446
30 % 1 1 11504

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures