Sequence Similarity Clusters for the Entities in PDB 3W6J

Entity #1 | Chains: A,D
ScpA protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41966
95 % 1 1 31772 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 1 1 30403
70 % 1 1 27229
50 % 1 1 23274
40 % 1 1 20478
30 % 1 2 13482
Entity #2 | Chains: B,C,E,F
ScpB protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 21424
95 % 1 1 18529 Flexibility: High
Max RMSD: 15.6, Avg RMSD: 10.7
PDBFlex
90 % 1 1 18050
70 % 1 1 16712
50 % 1 1 14530
40 % 1 1 12945
30 % 1 1 11073

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.