Sequence Similarity Clusters for the Entities in PDB 3W6J

Entity #1 | Chains: A,D
ScpA protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44339
95 % 1 1 33497 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 1 1 31990
70 % 1 1 28514
50 % 1 1 24299
40 % 1 1 21377
30 % 1 2 14113
Entity #2 | Chains: B,C,E,F
ScpB protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 22803
95 % 1 1 19650 Flexibility: High
Max RMSD: 15.6, Avg RMSD: 10.7
PDBFlex
90 % 1 1 19122
70 % 1 1 17660
50 % 1 1 15313
40 % 1 1 13618
30 % 1 1 11648

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures