Sequence Similarity Clusters for the Entities in PDB 3W3D

Entity #1 | Chains: A
Actin, gamma-enteric smooth muscle protein, length: 374 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54579
95 % 29 193 9 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.0
PDBFlex
90 % 29 198 10
70 % 31 203 15
50 % 31 210 16
40 % 31 229 23
30 % 31 249 40
Entity #2 | Chains: B
Deoxyribonuclease-1 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 10 5784
95 % 3 11 5790 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 3 11 5804
70 % 3 12 5101
50 % 3 12 4881
40 % 3 12 4616
30 % 3 12 4225

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures