Sequence Similarity Clusters for the Entities in PDB 3W3C

Entity #1 | Chains: A
Virulence regulon transcriptional activator VirB protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27405
95 % 2 3 24039 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.0
PDBFlex
90 % 2 3 23262
70 % 2 3 21168
50 % 2 3 18212
40 % 2 3 16092
30 % 2 3 13477
Entity #2 | Chains: B
DNA (26-MER) dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
DNA (26-MER) dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3VWB 1 A Virulence regulon transcriptional activator virB UNP residues 129-250 623
2 3W3C 1 A Virulence regulon transcriptional activator VirB UNP residues 129-250 623
3 3W2A 1 A Virulence regulon transcriptional activator VirB core domain, UNP residues 129-250 623