Sequence Similarity Clusters for the Entities in PDB 3W3C

Entity #1 | Chains: A
Virulence regulon transcriptional activator VirB protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27355
95 % 2 3 23999 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.0
PDBFlex
90 % 2 3 23221
70 % 2 3 21129
50 % 2 3 18179
40 % 2 3 16070
30 % 2 3 13462
Entity #2 | Chains: B
DNA (26-MER) dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
DNA (26-MER) dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures