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An Information Portal to 110071 Biological Macromolecular Structures

Crystal structure of HLA-B*5201 in complexed with HIV immunodominant epitope (TAFTIPSI)
Sequence Clustering and Redundancy Reduction Results
3W39
Sequence Clusters for the Sequence Entities in PDB 3W39
Entity #1: Chains: A,D - HLA class I histocompatibility antigen, B-52 alpha chain protein, length: 277 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 29782
95% 100 100 189
90% 167 168 130
70% 561 564 7
50% 566 569 7
40% 602 605 11
30% 706 712 13
Entity #2: Chains: B,E - Beta-2-microglobulin protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 475 483 2
95% 503 512 3
90% 511 520 3
70% 722 732 5
50% 740 750 5
40% 740 750 7
30% 740 750 11
Entity #3: Chains: C,F - peptid from Gag-Pol polyprotein protein, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.