Sequence Similarity Clusters for the Entities in PDB 3W39

Entity #1 | Chains: A,D
HLA class I histocompatibility antigen, B-52 alpha chain protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36592
95 % 134 134 216 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 198 199 132
70 % 681 684 6
50 % 686 689 6
40 % 735 739 10
30 % 849 856 15
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 585 596 2
95 % 627 639 3
90 % 636 648 4
70 % 865 875 4
50 % 887 900 3
40 % 887 900 8
30 % 887 897 14
Entity #3 | Chains: C,F
peptid from Gag-Pol polyprotein protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.