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Crystal structure of HLA-B*5201 in complexed with HIV immunodominant epitope (TAFTIPSI)
Sequence Clustering and Redundancy Reduction Results
3W39
Sequence Clusters for the Sequence Entities in PDB 3W39
Entity #1: Chains: A,D - HLA class I histocompatibility antigen, B-52 alpha chain protein, length: 277 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 28871
95% 91 91 226
90% 158 159 109
70% 546 549 7
50% 551 554 7
40% 579 582 11
30% 677 683 13
Entity #2: Chains: B,E - Beta-2-microglobulin protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 460 468 2
95% 488 497 3
90% 496 505 3
70% 701 711 5
50% 715 725 5
40% 715 725 7
30% 715 725 11
Entity #3: Chains: C,F - peptid from Gag-Pol polyprotein protein, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.