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Crystal structure of HLA-B*5201 in complexed with HIV immunodominant epitope (TAFTIPSI)
Sequence Clustering and Redundancy Reduction Results
3W39
Sequence Clusters for the Sequence Entities in PDB 3W39
Entity #1: Chains: A,D - HLA class I histocompatibility antigen, B-52 alpha chain protein, length: 277 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 27541
95% 84 84 251
90% 149 150 93
70% 517 520 7
50% 522 525 7
40% 550 553 10
30% 569 575 15
Entity #2: Chains: B,E - Beta-2-microglobulin protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 432 440 2
95% 459 468 3
90% 467 476 3
70% 665 675 5
50% 678 688 5
40% 678 688 6
30% 678 688 11
Entity #3: Chains: C,F - peptid from Gag-Pol polyprotein protein, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.