Sequence Similarity Clusters for the Entities in PDB 3W39

Entity #1 | Chains: A,D
HLA class I histocompatibility antigen, B-52 alpha chain protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 31683
95 % 100 100 234
90 % 169 170 138
70 % 569 573 7
50 % 574 578 7
40 % 613 618 11
30 % 720 728 14
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 484 494 2
95 % 521 532 3
90 % 530 541 3
70 % 744 756 5
50 % 762 774 5
40 % 762 774 9
30 % 762 774 11
Entity #3 | Chains: C,F
peptid from Gag-Pol polyprotein protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.