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An Information Portal to 106082 Biological Macromolecular Structures

Crystal structure of HLA-B*5201 in complexed with HIV immunodominant epitope (TAFTIPSI)
Sequence Clustering and Redundancy Reduction Results
3W39
Sequence Clusters for the Sequence Entities in PDB 3W39
Entity #1: Chains: A,D - HLA class I histocompatibility antigen, B-52 alpha chain protein, length: 277 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 28645
95% 90 90 223
90% 157 158 94
70% 545 548 7
50% 550 553 7
40% 578 581 10
30% 675 681 13
Entity #2: Chains: B,E - Beta-2-microglobulin protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 458 466 2
95% 486 495 3
90% 494 503 3
70% 699 709 5
50% 713 723 5
40% 713 723 6
30% 713 723 11
Entity #3: Chains: C,F - peptid from Gag-Pol polyprotein protein, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.