Sequence Similarity Clusters for the Entities in PDB 3W39

Entity #1 | Chains: A,D
HLA class I histocompatibility antigen, B-52 alpha chain protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 32342
95 % 102 102 233
90 % 173 174 137
70 % 590 594 7
50 % 595 599 7
40 % 634 639 11
30 % 744 752 13
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 501 511 2
95 % 538 549 3
90 % 547 558 3
70 % 768 780 5
50 % 786 798 5
40 % 786 798 9
30 % 786 798 11
Entity #3 | Chains: C,F
peptid from Gag-Pol polyprotein protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.