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Crystal structure of HLA-B*5201 in complexed with HIV immunodominant epitope (TAFTIPSI)
Sequence Clustering and Redundancy Reduction Results
3W39
Sequence Clusters for the Sequence Entities in PDB 3W39
Entity #1: Chains: A,D - HLA class I histocompatibility antigen, B-52 alpha chain protein, length: 277 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 27676
95% 84 84 253
90% 149 150 94
70% 520 523 7
50% 525 528 7
40% 553 556 10
30% 572 578 15
Entity #2: Chains: B,E - Beta-2-microglobulin protein, length: 100 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 434 442 2
95% 461 470 3
90% 469 478 3
70% 668 678 5
50% 681 691 5
40% 681 691 6
30% 681 691 11
Entity #3: Chains: C,F - peptid from Gag-Pol polyprotein protein, length: 8 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.