Sequence Similarity Clusters for the Entities in PDB 3W39

Entity #1 | Chains: A,D
HLA class I histocompatibility antigen, B-52 alpha chain protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37598
95 % 135 135 226 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 200 201 135
70 % 713 719 6
50 % 718 724 6
40 % 768 775 10
30 % 889 899 15
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 606 618 2
95 % 649 662 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 658 671 4
70 % 902 916 4
50 % 924 938 3
40 % 924 938 7
30 % 924 938 12
Entity #3 | Chains: C,F
peptid from Gag-Pol polyprotein protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures