Sequence Similarity Clusters for the Entities in PDB 3W39

Entity #1 | Chains: A,D
HLA class I histocompatibility antigen, B-52 alpha chain protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37145
95 % 134 134 220 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.0
PDBFlex
90 % 199 200 132
70 % 699 705 6
50 % 704 710 6
40 % 754 761 10
30 % 871 881 15
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 596 607 2
95 % 639 651 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 648 660 4
70 % 885 898 4
50 % 907 920 3
40 % 907 920 8
30 % 907 920 12
Entity #3 | Chains: C,F
peptid from Gag-Pol polyprotein protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.