Sequence Similarity Clusters for the Entities in PDB 3W2A

Entity #1 | Chains: A
Virulence regulon transcriptional activator VirB protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 27240
95 % 3 3 23906 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 1.0
PDBFlex
90 % 3 3 23139
70 % 3 3 21051
50 % 3 3 18110
40 % 3 3 16014
30 % 3 3 13414
Entity #2 | Chains: B
DNA (31-mer) dna, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
DNA (31-mer) dna, length: 31 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures