Sequence Similarity Clusters for the Entities in PDB 3W1K

Entity #1 | Chains: A,B,C,D,E
L-seryl-tRNA(Sec) selenium transferase protein, length: 452 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 6051
95 % 3 3 5432 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.5
PDBFlex
90 % 3 3 5450
70 % 3 3 5372
50 % 3 3 5107
40 % 3 3 4826
30 % 3 3 4404
Entity #2 | Chains: F,G,H,I,J
selenocysteine tRNA rna, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures