Sequence Similarity Clusters for the Entities in PDB 3W1K

Entity #1 | Chains: A,B,C,D,E
L-seryl-tRNA(Sec) selenium transferase protein, length: 452 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 5885
95 % 3 3 5253 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.5
PDBFlex
90 % 3 3 5267
70 % 3 3 5212
50 % 3 3 4957
40 % 3 3 4684
30 % 3 3 4278
Entity #2 | Chains: F,G,H,I,J
selenocysteine tRNA rna, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.