Sequence Similarity Clusters for the Entities in PDB 3W13

Entity #1 | Chains: E
Insulin receptor domains L1-CR protein, length: 310 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 10291
95 % 6 7 10339 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 6 7 10215
70 % 6 7 9708
50 % 6 7 8801
40 % 6 7 8059
30 % 6 7 7116
Entity #2 | Chains: C
monoclonal antibody fab 83-7 fragment - heavy chain protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 15923
95 % 4 5 14918 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 5 14650
70 % 28 36 1257
50 % 517 580 7
40 % 820 933 5
30 % 907 1061 7
Entity #3 | Chains: D
monoclonal antibody fab 83-7 fragment - light chain protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 15953
95 % 4 5 14951 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 6 12988
70 % 157 191 72
50 % 259 308 21
40 % 821 933 5
30 % 908 1061 7
Entity #4 | Chains: A
Insulin A chain protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 183 243 5
95 % 215 285 7 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.9
PDBFlex
90 % 217 289 8
70 % 217 289 11
50 % 217 289 15
40 % 217 289 25
30 % 217 289 44
Entity #5 | Chains: B
Insulin B chain protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 186 215 7
95 % 215 282 8
90 % 218 288 9
70 % 218 291 12
50 % 218 291 16
40 % 218 291 26
30 % 218 291 45
Entity #6 | Chains: F
Insulin receptor alphact peptide protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 75356
95 % 1 1 52658
90 % 1 1 49934
70 % 1 1 43707
50 % 1 1 37319
40 % 1 1 32938
30 % 1 1 27990

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures