Sequence Similarity Clusters for the Entities in PDB 3W13

Entity #1 | Chains: E
Insulin receptor domains L1-CR protein, length: 310 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 7 11621
95 % 6 7 11224 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 6 7 11078
70 % 6 7 10458
50 % 6 7 9426
40 % 6 7 8538
30 % 6 7 7233
Entity #2 | Chains: C
monoclonal antibody fab 83-7 fragment - heavy chain protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 16873
95 % 4 5 15664 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 5 15331
70 % 64 76 542
50 % 541 609 6
40 % 5435 5750 1
30 % 6745 7168 1
Entity #3 | Chains: D
monoclonal antibody fab 83-7 fragment - light chain protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 16652
95 % 4 5 15457 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 7 11107
70 % 177 215 58
50 % 264 317 23
40 % 308 361 26
30 % 6746 7168 1
Entity #4 | Chains: A
Insulin A chain protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 221 289 6
95 % 222 295 8 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.9
PDBFlex
90 % 223 297 9
70 % 227 303 11
50 % 227 303 16
40 % 227 303 29
30 % 227 303 45
Entity #5 | Chains: B
Insulin B chain protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 215 265 7
95 % 228 302 7
90 % 228 302 8
70 % 228 305 12
50 % 228 305 17
40 % 228 305 31
30 % 228 305 47
Entity #6 | Chains: F
Insulin receptor alphact peptide protein, length: 23 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62947
95 % 1 1 51169
90 % 1 1 48533
70 % 1 1 42514
50 % 1 1 36060
40 % 1 1 31569
30 % 1 1 26401

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures