Sequence Similarity Clusters for the Entities in PDB 3VZV

Entity #1 | Chains: A,B
E3 ubiquitin-protein ligase Mdm2 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 6554
95 % 74 77 220 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 1.4
PDBFlex
90 % 74 77 230
70 % 84 89 216
50 % 97 109 204
40 % 97 109 221
30 % 97 109 237

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures