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An Information Portal to 105339 Biological Macromolecular Structures

Crystal structure of the methyl CpG Binding Domain of MBD4 in complex with the 5mCG/TG sequence in space group P1
Sequence Clustering and Redundancy Reduction Results
3VYQ
Sequence Clusters for the Sequence Entities in PDB 3VYQ
Entity #1: Chains: A,D - Methyl-CpG-binding domain protein 4 protein, length: 74 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 12016
95% 4 4 11499
90% 4 4 11317
70% 4 6 7792
50% 4 6 7136
40% 4 6 6574
30% 4 6 5872
Entity #2: Chains: B - DNA (5'-D(*AP*CP*AP*TP*CP*(5CM)P*GP*GP*TP*GP*A)-3') dna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - DNA (5'-D(*TP*CP*AP*CP*TP*GP*GP*AP*TP*GP*T)-3') dna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.