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Crystal structure of methyl CpG binding domain of MBD4 in complex with the 5mCG/hmCG sequence
Sequence Clustering and Redundancy Reduction Results
3VYB
Sequence Clusters for the Sequence Entities in PDB 3VYB
Entity #1: Chains: A - Methyl-CpG-binding domain protein 4 protein, length: 69 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 11702
95% 3 4 11220
90% 3 4 11046
70% 3 6 7605
50% 3 6 6971
40% 3 6 6428
30% 3 6 5752
Entity #2: Chains: B - DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP*CP*A)-3') dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - DNA (5'-D(*GP*TP*CP*(5HC)P*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)-3') dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.