Sequence Similarity Clusters for the Entities in PDB 3VYB

Entity #1 | Chains: A
Methyl-CpG-binding domain protein 4 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 16100
95 % 3 4 14976 Flexibility: Medium
Max RMSD: 11.2, Avg RMSD: 6.8
PDBFlex
90 % 3 4 14671
70 % 3 6 10223
50 % 3 6 9207
40 % 3 6 8330
30 % 3 6 7215
Entity #2 | Chains: B
DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP*CP*A)-3') dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
DNA (5'-D(*GP*TP*CP*(5HC)P*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)-3') dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures