POP-OUT | CLOSE

An Information Portal to 110790 Biological Macromolecular Structures

Crystal structure of methyl CpG Binding Domain of MBD4 in complex with the 5mCG/TG sequence
Sequence Clustering and Redundancy Reduction Results
3VXV
Sequence Clusters for the Sequence Entities in PDB 3VXV
Entity #1: Chains: A - Methyl-CpG-binding domain protein 4 protein, length: 69 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 4 12754
95% 1 4 12075
90% 1 4 11875
70% 1 6 8166
50% 1 6 7458
40% 1 6 6880
30% 1 6 6118
Entity #2: Chains: B - DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP*CP*A)-3') dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - DNA (5'-D(*GP*TP*CP*TP*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)-3') dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.