Sequence Similarity Clusters for the Entities in PDB 3VXV

Entity #1 | Chains: A
Methyl-CpG-binding domain protein 4 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 16102
95 % 1 4 15082 Flexibility: Medium
Max RMSD: 11.2, Avg RMSD: 7.5
PDBFlex
90 % 1 4 14803
70 % 1 6 10168
50 % 1 6 9202
40 % 1 6 8419
30 % 1 6 7414
Entity #2 | Chains: B
DNA (5'-D(*GP*TP*CP*AP*CP*TP*AP*CP*(5CM)P*GP*GP*AP*CP*A)-3') dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
DNA (5'-D(*GP*TP*CP*TP*GP*GP*TP*AP*GP*TP*GP*AP*CP*T)-3') dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.