Sequence Similarity Clusters for the Entities in PDB 3VW3

Entity #1 | Chains: L
Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62430
95 % 126 148 151 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 135 158 148
70 % 1600 2479 1
50 % 3247 5021 1
40 % 3247 5021 1
30 % 3823 5951 1
Entity #2 | Chains: H
Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 62080
95 % 1 1 43578
90 % 8 11 4335
70 % 1567 2429 2
50 % 3248 5021 1
40 % 3248 5021 1
30 % 3824 5951 1
Entity #3 | Chains: A
DNA (5'-D(*GP*CP*GP*AP*GP*TP*GP*AP*(64T)P*(5PY)P*AP*TP*GP*GP*AP*CP*GP*G)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
DNA (5'-D(*CP*CP*CP*GP*TP*CP*CP*AP*TP*AP*AP*TP*CP*AP*CP*TP*CP*G)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures