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Antibody 64M-5 Fab in complex with a double-stranded DNA (6-4) photoproduct
Sequence Clustering and Redundancy Reduction Results
3VW3
Sequence Clusters for the Sequence Entities in PDB 3VW3
Entity #1: Chains: L - Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain) protein, length: 217 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47324
95% 109 127 129
90% 113 132 115
70% 901 1337 3
50% 2134 3184 1
40% 2135 3185 1
30% 2466 3767 1
Entity #2: Chains: H - Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain) protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47060
95% 1 1 33202
90% 5 5 10978
70% 1029 1535 2
50% 2135 3184 1
40% 2136 3185 1
30% 2467 3767 1
Entity #3: Chains: A - DNA (5'-D(*GP*CP*GP*AP*GP*TP*GP*AP*(64T)P*(5PY)P*AP*TP*GP*GP*AP*CP*GP*G)-3') dna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - DNA (5'-D(*CP*CP*CP*GP*TP*CP*CP*AP*TP*AP*AP*TP*CP*AP*CP*TP*CP*G)-3') dna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.