Sequence Similarity Clusters for the Entities in PDB 3VW3

Entity #1 | Chains: L
Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58779
95 % 126 145 147 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 135 155 149
70 % 1205 1845 2
50 % 2938 4545 1
40 % 2938 4545 1
30 % 3420 5350 1
Entity #2 | Chains: H
Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58453
95 % 1 1 41068
90 % 8 11 4042
70 % 1421 2201 1
50 % 2939 4545 1
40 % 2939 4545 1
30 % 3421 5350 1
Entity #3 | Chains: A
DNA (5'-D(*GP*CP*GP*AP*GP*TP*GP*AP*(64T)P*(5PY)P*AP*TP*GP*GP*AP*CP*GP*G)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
DNA (5'-D(*CP*CP*CP*GP*TP*CP*CP*AP*TP*AP*AP*TP*CP*AP*CP*TP*CP*G)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.