Sequence Similarity Clusters for the Entities in PDB 3VW3

Entity #1 | Chains: L
Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52249
95 % 123 147 153 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 135 162 147
70 % 1635 2553 1
50 % 3326 5180 1
40 % 3775 5834 1
30 % 4682 7269 1
Entity #2 | Chains: H
Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 53462
95 % 1 1 44014
90 % 8 11 4318
70 % 1607 2511 2
50 % 3327 5180 1
40 % 3776 5834 1
30 % 4683 7269 1
Entity #3 | Chains: A
DNA (5'-D(*GP*CP*GP*AP*GP*TP*GP*AP*(64T)P*(5PY)P*AP*TP*GP*GP*AP*CP*GP*G)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
DNA (5'-D(*CP*CP*CP*GP*TP*CP*CP*AP*TP*AP*AP*TP*CP*AP*CP*TP*CP*G)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures