Sequence Similarity Clusters for the Entities in PDB 3VW3

Entity #1 | Chains: L
Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain) protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 61536
95 % 126 146 149 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 135 156 149
70 % 1558 2416 1
50 % 3161 4892 1
40 % 3161 4892 1
30 % 3682 5759 1
Entity #2 | Chains: H
Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61188
95 % 1 1 42978
90 % 8 11 4252
70 % 1525 2366 2
50 % 3162 4892 1
40 % 3162 4892 1
30 % 3683 5759 1
Entity #3 | Chains: A
DNA (5'-D(*GP*CP*GP*AP*GP*TP*GP*AP*(64T)P*(5PY)P*AP*TP*GP*GP*AP*CP*GP*G)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: B
DNA (5'-D(*CP*CP*CP*GP*TP*CP*CP*AP*TP*AP*AP*TP*CP*AP*CP*TP*CP*G)-3') dna, length: 18 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures