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Antibody 64M-5 Fab in complex with a double-stranded DNA (6-4) photoproduct
Sequence Clustering and Redundancy Reduction Results
3VW3
Sequence Clusters for the Sequence Entities in PDB 3VW3
Entity #1: Chains: L - Anti-(6-4) photoproduct antibody 64M-5 Fab (light chain) protein, length: 217 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47649
95% 109 127 132
90% 113 132 133
70% 909 1349 3
50% 2152 3210 1
40% 2153 3211 1
30% 2484 3793 1
Entity #2: Chains: H - Anti-(6-4) photoproduct antibody 64M-5 Fab (heavy chain) protein, length: 220 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47386
95% 1 1 33414
90% 5 5 11048
70% 1038 1548 2
50% 2153 3210 1
40% 2154 3211 1
30% 2485 3793 1
Entity #3: Chains: A - DNA (5'-D(*GP*CP*GP*AP*GP*TP*GP*AP*(64T)P*(5PY)P*AP*TP*GP*GP*AP*CP*GP*G)-3') dna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: B - DNA (5'-D(*CP*CP*CP*GP*TP*CP*CP*AP*TP*AP*AP*TP*CP*AP*CP*TP*CP*G)-3') dna, length: 18 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.