Sequence Similarity Clusters for the Entities in PDB 3VVW

Entity #1 | Chains: A
Calcium-binding and coiled-coil domain-containing protein 2 protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 47329
95 % 2 2 35379 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 2.1
PDBFlex
90 % 2 2 33771
70 % 2 2 30032
50 % 2 2 25607
40 % 3 3 14137
30 % 3 3 12089
Entity #2 | Chains: B
Microtubule-associated proteins 1A/1B light chain 3C protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 6043
95 % 3 4 6700 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 3 4 6694
70 % 3 4 6523
50 % 29 39 756
40 % 48 71 447
30 % 49 72 440

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures