Sequence Similarity Clusters for the Entities in PDB 3VUY

Entity #1 | Chains: A,B,C
Polyubiquitin-C protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 97 314 4
95 % 123 383 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.0
PDBFlex
90 % 134 410 6
70 % 138 430 8
50 % 143 451 12
40 % 152 475 17
30 % 334 1026 9
Entity #2 | Chains: D,E,F
Tumor necrosis factor alpha-induced protein 3 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 7463
95 % 3 3 8036 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 3 7994
70 % 3 3 7738
50 % 3 3 7122
40 % 3 3 6620
30 % 3 3 5905

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.