Sequence Similarity Clusters for the Entities in PDB 3VUY

Entity #1 | Chains: A,B,C
Polyubiquitin-C protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 107 332 5
95 % 136 410 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 147 437 6
70 % 152 460 8
50 % 157 481 11
40 % 166 505 15
30 % 351 1062 9
Entity #2 | Chains: D,E,F
Tumor necrosis factor alpha-induced protein 3 protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 7844
95 % 3 3 8405 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 3 3 8351
70 % 3 3 8058
50 % 3 3 7426
40 % 3 3 6897
30 % 3 3 6152

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures