Sequence Similarity Clusters for the Entities in PDB 3VUW

Entity #1 | Chains: A,B,C
Polyubiquitin-C protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 66 300 6
95 % 86 366 5 Flexibility: Low
Max RMSD: 5.4, Avg RMSD: 1.1
PDBFlex
90 % 96 392 6
70 % 98 412 8
50 % 102 433 12
40 % 104 456 17
30 % 243 972 9
Entity #2 | Chains: E,F,G
Tumor necrosis factor alpha-induced protein 3 protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 7271
95 % 2 3 7810 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 3 7771
70 % 2 3 7495
50 % 2 3 6917
40 % 2 3 6435
30 % 2 3 5740

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.