Sequence Similarity Clusters for the Entities in PDB 3VUW

Entity #1 | Chains: A,B,C
Polyubiquitin-C protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 69 307 6
95 % 90 374 5 Flexibility: Low
Max RMSD: 4.6, Avg RMSD: 1.1
PDBFlex
90 % 100 400 6
70 % 102 420 8
50 % 106 441 12
40 % 108 465 17
30 % 264 1012 10
Entity #2 | Chains: E,F,G
Tumor necrosis factor alpha-induced protein 3 protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 7368
95 % 2 3 7920 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 3 7878
70 % 2 3 7587
50 % 2 3 6991
40 % 2 3 6505
30 % 2 3 5801

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.