Sequence Similarity Clusters for the Entities in PDB 3VUW

Entity #1 | Chains: A,B,C
Polyubiquitin-C protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 97 397 4
95 % 104 421 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 112 434 6
70 % 117 467 8
50 % 121 488 10
40 % 124 515 15
30 % 148 673 19
Entity #2 | Chains: E,F,G
Tumor necrosis factor alpha-induced protein 3 protein, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 7877
95 % 2 3 7960 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 2 3 7886
70 % 2 3 7634
50 % 2 3 7020
40 % 2 3 6484
30 % 2 3 5677

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures