Sequence Similarity Clusters for the Entities in PDB 3VUD

Entity #1 | Chains: A
Mitogen-activated protein kinase 8 protein, length: 370 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53552
95 % 27 31 1188 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.6
PDBFlex
90 % 75 79 410
70 % 78 82 426
50 % 458 468 53
40 % 465 475 61
30 % 3689 3825 2
Entity #2 | Chains: F
Peptide from C-Jun-amino-terminal kinase-interacting protein 1 protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.