Sequence Similarity Clusters for the Entities in PDB 3VT1

Entity #1 | Chains: A,B,C,D,E,F
Ricin B lectin protein, length: 526 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 1678
95 % 5 5 1981 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 5 5 2023
70 % 5 5 2035
50 % 5 5 2062
40 % 5 5 2034
30 % 5 5 1933

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3VSF 1 A, B, C, D, E, F Ricin B lectin UNP residues 31-520 1515
2 3VSZ 1 A, B, C, D, E, F Ricin B lectin UNP residues 31-520 1515
3 3VT0 1 A, B, C, D, E, F Ricin B lectin UNP residues 31-520 1515
4 3VT2 1 A, B, C, D, E, F Ricin B lectin UNP residues 31-520 1515
5 3VT1 1 A, B, C, D, E, F Ricin B lectin UNP residues 31-520 1515