Sequence Similarity Clusters for the Entities in PDB 3VSI

Entity #1 | Chains: A,C
2-amino-5-chlorophenol 1,6-dioxygenase alpha subunit protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 9722
95 % 4 4 9561 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 4 4 9438
70 % 4 4 9019
50 % 4 4 8225
40 % 4 4 7509
30 % 4 4 6527
Entity #2 | Chains: B,D
2-amino-5-chlorophenol 1,6-dioxygenase beta subunit protein, length: 312 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 9721
95 % 4 4 9560 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 4 4 9437
70 % 4 4 9018
50 % 4 4 8224
40 % 4 4 7508
30 % 4 4 6526

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures