Sequence Similarity Clusters for the Entities in PDB 3VSI

Entity #1 | Chains: A,C
2-amino-5-chlorophenol 1,6-dioxygenase alpha subunit protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 8862
95 % 4 4 9142 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 4 4 9057
70 % 4 4 8696
50 % 4 4 7897
40 % 4 4 7272
30 % 4 4 6422
Entity #2 | Chains: B,D
2-amino-5-chlorophenol 1,6-dioxygenase beta subunit protein, length: 312 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 8653
95 % 4 4 8971 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 4 4 8897
70 % 4 4 8555
50 % 4 4 7788
40 % 4 4 7177
30 % 4 4 6349

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures