Sequence Similarity Clusters for the Entities in PDB 3VSH

Entity #1 | Chains: A,C
2-amino-5-chlorophenol 1,6-dioxygenase alpha subunit protein, length: 271 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 9093
95 % 3 4 9347 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 3 4 9260
70 % 3 4 8877
50 % 3 4 8058
40 % 3 4 7419
30 % 3 4 6552
Entity #2 | Chains: B,D
2-amino-5-chlorophenol 1,6-dioxygenase beta subunit protein, length: 312 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 8874
95 % 3 4 9171 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 3 4 9093
70 % 3 4 8730
50 % 3 4 7945
40 % 3 4 7321
30 % 3 4 6477

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures