Sequence Similarity Clusters for the Entities in PDB 3VR6

Entity #1 | Chains: A,B,C
V-type sodium ATPase catalytic subunit A protein, length: 600 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 3033
95 % 2 5 3767
90 % 2 5 3791
70 % 2 5 3732
50 % 10 35 533
40 % 10 35 572
30 % 10 35 578
Entity #2 | Chains: D,E,F
V-type sodium ATPase subunit B protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 3051
95 % 2 5 3782
90 % 2 5 3806
70 % 2 5 3743
50 % 7 20 797
40 % 7 20 825
30 % 7 20 822
Entity #3 | Chains: G
V-type sodium ATPase subunit D protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 18580
95 % 3 4 16256
90 % 3 4 15887
70 % 3 4 14765
50 % 3 4 12922
40 % 3 4 11556
30 % 3 10 3729
Entity #4 | Chains: H
V-type sodium ATPase subunit G protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 20802
95 % 3 4 17859
90 % 3 4 17387
70 % 3 4 16085
50 % 3 4 14047
40 % 3 4 12565
30 % 3 4 10789

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.