Sequence Similarity Clusters for the Entities in PDB 3VR6

Entity #1 | Chains: A,B,C
V-type sodium ATPase catalytic subunit A protein, length: 600 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 2882
95 % 2 5 3605
90 % 2 5 3636
70 % 2 5 3590
50 % 10 31 712
40 % 10 31 742
30 % 10 31 744
Entity #2 | Chains: D,E,F
V-type sodium ATPase subunit B protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 2899
95 % 2 5 3621
90 % 2 5 3652
70 % 2 5 3601
50 % 7 18 866
40 % 7 18 890
30 % 7 18 881
Entity #3 | Chains: G
V-type sodium ATPase subunit D protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 17782
95 % 3 4 15599
90 % 3 4 15238
70 % 3 4 14173
50 % 3 4 12428
40 % 3 4 11128
30 % 3 8 4186
Entity #4 | Chains: H
V-type sodium ATPase subunit G protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 19931
95 % 3 4 17170
90 % 3 4 16710
70 % 3 4 15452
50 % 3 4 13521
40 % 3 4 12100
30 % 3 4 10396

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.