Sequence Similarity Clusters for the Entities in PDB 3VR6

Entity #1 | Chains: A,B,C
V-type sodium ATPase catalytic subunit A protein, length: 600 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 1824
95 % 2 8 2386 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.4
PDBFlex
90 % 2 8 2448
70 % 2 8 2435
50 % 10 42 500
40 % 10 42 539
30 % 10 42 541
Entity #2 | Chains: D,E,F
V-type sodium ATPase subunit B protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 1849
95 % 2 8 2406 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 2 8 2466
70 % 2 8 2451
50 % 7 24 774
40 % 7 24 807
30 % 7 24 794
Entity #3 | Chains: G
V-type sodium ATPase subunit D protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 10468
95 % 3 7 10494
90 % 3 7 10359
70 % 3 7 9838
50 % 3 7 8918
40 % 3 7 8160
30 % 3 14 3282
Entity #4 | Chains: H
V-type sodium ATPase subunit G protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 10764
95 % 3 7 10772 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 3 7 10623
70 % 3 7 10082
50 % 3 7 9124
40 % 3 7 8349
30 % 3 7 7357

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.