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Crystal structure of AMP-PNP bound Enterococcus hirae V1-ATPase [bV1]
Sequence Clustering and Redundancy Reduction Results
3VR6
Sequence Clusters for the Sequence Entities in PDB 3VR6
Entity #1: Chains: A,B,C - V-type sodium ATPase catalytic subunit A protein, length: 600 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 2586
95% 2 5 3232
90% 2 5 3263
70% 2 5 3243
50% 9 25 803
40% 9 25 822
30% 9 25 827
Entity #2: Chains: D,E,F - V-type sodium ATPase subunit B protein, length: 465 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 5 2600
95% 2 5 3247
90% 2 5 3279
70% 2 5 3255
50% 7 18 790
40% 7 18 806
30% 7 18 809
Entity #3: Chains: G - V-type sodium ATPase subunit D protein, length: 217 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 16069
95% 3 4 14197
90% 3 4 13892
70% 3 4 12955
50% 3 4 11375
40% 3 4 10204
30% 3 8 3861
Entity #4: Chains: H - V-type sodium ATPase subunit G protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 18035
95% 3 4 15632
90% 3 4 15239
70% 3 4 14134
50% 3 4 12381
40% 3 4 11103
30% 3 4 9577
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.