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Crystal structure of nucleotide-free Enterococcus hirae V1-ATPase [eV1(L)]
Sequence Clustering and Redundancy Reduction Results
3VR5
Sequence Clusters for the Sequence Entities in PDB 3VR5
Entity #1: Chains: A,B,C - V-type sodium ATPase catalytic subunit A protein, length: 600 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 5 2773
95% 5 5 3459
90% 5 5 3492
70% 5 5 3454
50% 21 28 717
40% 21 28 743
30% 21 28 738
Entity #2: Chains: D,E,F - V-type sodium ATPase subunit B protein, length: 465 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 5 2789
95% 5 5 3474
90% 5 5 3508
70% 5 5 3466
50% 13 18 845
40% 13 18 867
30% 13 18 861
Entity #3: Chains: G - V-type sodium ATPase subunit D protein, length: 217 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 17043
95% 4 4 14989
90% 4 4 14651
70% 4 4 13650
50% 4 4 11976
40% 4 4 10746
30% 4 8 4045
Entity #4: Chains: H - V-type sodium ATPase subunit G protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 19086
95% 4 4 16485
90% 4 4 16054
70% 4 4 14887
50% 4 4 13038
40% 4 4 11696
30% 4 4 10062
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.