Sequence Similarity Clusters for the Entities in PDB 3VR5

Entity #1 | Chains: A,B,C
V-type sodium ATPase catalytic subunit A protein, length: 600 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 1682
95 % 8 8 2237
90 % 8 8 2302
70 % 8 8 2293
50 % 27 39 511
40 % 27 39 548
30 % 27 39 548
Entity #2 | Chains: D,E,F
V-type sodium ATPase subunit B protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 1707
95 % 8 8 2255
90 % 8 8 2316
70 % 8 8 2306
50 % 16 24 705
40 % 16 24 742
30 % 16 24 734
Entity #3 | Chains: G
V-type sodium ATPase subunit D protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 9812
95 % 7 7 9822
90 % 7 7 9710
70 % 7 7 9224
50 % 7 7 8402
40 % 7 7 7698
30 % 7 14 3117
Entity #4 | Chains: H
V-type sodium ATPase subunit G protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 10080
95 % 7 7 10077
90 % 7 7 9949
70 % 7 7 9440
50 % 7 7 8586
40 % 7 7 7869
30 % 7 7 6945

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.