Sequence Similarity Clusters for the Entities in PDB 3VR5

Entity #1 | Chains: A,B,C
V-type sodium ATPase catalytic subunit A protein, length: 600 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 2456
95 % 8 8 2743 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.4
PDBFlex
90 % 8 8 2807
70 % 8 8 2790
50 % 28 47 488
40 % 28 47 540
30 % 28 47 537
Entity #2 | Chains: D,E,F
V-type sodium ATPase subunit B protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 2455
95 % 8 8 2742 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 8 8 2806
70 % 8 8 2789
50 % 16 28 722
40 % 20 32 690
30 % 22 34 640
Entity #3 | Chains: G
V-type sodium ATPase subunit D protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 11905
95 % 7 7 11462 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.6
PDBFlex
90 % 7 7 11280
70 % 7 7 10667
50 % 7 7 9564
40 % 7 7 8640
30 % 7 18 2831
Entity #4 | Chains: H
V-type sodium ATPase subunit G protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 11906
95 % 7 7 11463 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 7 7 11281
70 % 7 7 10668
50 % 7 7 9565
40 % 7 7 8641
30 % 7 7 7473

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures