Sequence Similarity Clusters for the Entities in PDB 3VR5

Entity #1 | Chains: A,B,C
V-type sodium ATPase catalytic subunit A protein, length: 600 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 1800
95 % 8 8 2369 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.4
PDBFlex
90 % 8 8 2431
70 % 8 8 2417
50 % 27 42 494
40 % 27 42 534
30 % 27 42 536
Entity #2 | Chains: D,E,F
V-type sodium ATPase subunit B protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 1824
95 % 8 8 2388 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 8 8 2447
70 % 8 8 2431
50 % 16 24 764
40 % 16 24 797
30 % 16 24 786
Entity #3 | Chains: G
V-type sodium ATPase subunit D protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 10379
95 % 7 7 10412 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.7
PDBFlex
90 % 7 7 10288
70 % 7 7 9785
50 % 7 7 8864
40 % 7 7 8112
30 % 7 14 3262
Entity #4 | Chains: H
V-type sodium ATPase subunit G protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 10674
95 % 7 7 10693 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 7 7 10553
70 % 7 7 10029
50 % 7 7 9070
40 % 7 7 8302
30 % 7 7 7316

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.