Sequence Similarity Clusters for the Entities in PDB 3VR5

Entity #1 | Chains: A,B,C
V-type sodium ATPase catalytic subunit A protein, length: 600 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 1646
95 % 8 8 2197
90 % 8 8 2258
70 % 8 8 2255
50 % 27 38 514
40 % 27 38 550
30 % 27 38 550
Entity #2 | Chains: D,E,F
V-type sodium ATPase subunit B protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 8 1672
95 % 8 8 2214
90 % 8 8 2272
70 % 8 8 2268
50 % 16 23 725
40 % 16 23 765
30 % 16 23 765
Entity #3 | Chains: G
V-type sodium ATPase subunit D protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 9678
95 % 7 7 9691
90 % 7 7 9585
70 % 7 7 9111
50 % 7 7 8298
40 % 7 7 7599
30 % 7 13 3306
Entity #4 | Chains: H
V-type sodium ATPase subunit G protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 7 9941
95 % 7 7 9940
90 % 7 7 9817
70 % 7 7 9319
50 % 7 7 8474
40 % 7 7 7765
30 % 7 7 6854

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.