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Crystal structure of nucleotide-free Enterococcus hirae V1-ATPase [eV1(L)]
Sequence Clustering and Redundancy Reduction Results
3VR5
Sequence Clusters for the Sequence Entities in PDB 3VR5
Entity #1: Chains: A,B,C - V-type sodium ATPase catalytic subunit A protein, length: 600 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 5 2710
95% 5 5 3381
90% 5 5 3413
70% 5 5 3396
50% 21 28 701
40% 21 28 731
30% 21 28 733
Entity #2: Chains: D,E,F - V-type sodium ATPase subunit B protein, length: 465 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 5 5 2726
95% 5 5 3396
90% 5 5 3429
70% 5 5 3408
50% 13 18 835
40% 13 18 854
30% 13 18 853
Entity #3: Chains: G - V-type sodium ATPase subunit D protein, length: 217 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 16876
95% 4 4 14829
90% 4 4 14507
70% 4 4 13534
50% 4 4 11876
40% 4 4 10656
30% 4 8 4012
Entity #4: Chains: H - V-type sodium ATPase subunit G protein, length: 115 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 4 18907
95% 4 4 16318
90% 4 4 15906
70% 4 4 14769
50% 4 4 12936
40% 4 4 11606
30% 4 4 9990
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.