Sequence Similarity Clusters for the Entities in PDB 3VR5

Entity #1 | Chains: A,B,C
V-type sodium ATPase catalytic subunit A protein, length: 600 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 1837
95 % 8 8 2408 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.4
PDBFlex
90 % 8 8 2474
70 % 8 8 2461
50 % 28 43 500
40 % 28 43 540
30 % 28 43 536
Entity #2 | Chains: D,E,F
V-type sodium ATPase subunit B protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 1862
95 % 8 8 2428 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 8 8 2492
70 % 8 8 2477
50 % 16 24 776
40 % 16 24 810
30 % 16 24 798
Entity #3 | Chains: G
V-type sodium ATPase subunit D protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 10524
95 % 7 7 10544 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.7
PDBFlex
90 % 7 7 10407
70 % 7 7 9885
50 % 7 7 8965
40 % 7 7 8202
30 % 7 14 3299
Entity #4 | Chains: H
V-type sodium ATPase subunit G protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 10822
95 % 7 7 10823 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 7 7 10672
70 % 7 7 10131
50 % 7 7 9171
40 % 7 7 8392
30 % 7 7 7394

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures