Sequence Similarity Clusters for the Entities in PDB 3VR5

Entity #1 | Chains: A,B,C
V-type sodium ATPase catalytic subunit A protein, length: 600 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 1727
95 % 8 8 2288 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.4
PDBFlex
90 % 8 8 2356
70 % 8 8 2341
50 % 27 41 490
40 % 27 41 529
30 % 27 41 529
Entity #2 | Chains: D,E,F
V-type sodium ATPase subunit B protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 1750
95 % 8 8 2306 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 8 8 2371
70 % 8 8 2356
50 % 16 24 732
40 % 16 24 766
30 % 16 24 755
Entity #3 | Chains: G
V-type sodium ATPase subunit D protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 10071
95 % 7 7 10083 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.7
PDBFlex
90 % 7 7 9961
70 % 7 7 9458
50 % 7 7 8592
40 % 7 7 7870
30 % 7 14 3170
Entity #4 | Chains: H
V-type sodium ATPase subunit G protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 10348
95 % 7 7 10347 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 7 7 10209
70 % 7 7 9678
50 % 7 7 8781
40 % 7 7 8044
30 % 7 7 7083

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.