Sequence Similarity Clusters for the Entities in PDB 3VR4

Entity #1 | Chains: A,B,C
V-type sodium ATPase catalytic subunit A protein, length: 600 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 3019
95 % 1 5 3753
90 % 1 5 3775
70 % 1 5 3721
50 % 2 35 529
40 % 2 35 566
30 % 2 35 572
Entity #2 | Chains: D,E,F
V-type sodium ATPase subunit B protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 3037
95 % 1 5 3768
90 % 1 5 3790
70 % 1 5 3732
50 % 5 20 795
40 % 5 20 823
30 % 5 20 821
Entity #3 | Chains: G
V-type sodium ATPase subunit D protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 18487
95 % 2 4 16188
90 % 2 4 15818
70 % 2 4 14706
50 % 2 4 12875
40 % 2 4 11516
30 % 2 10 3715
Entity #4 | Chains: H
V-type sodium ATPase subunit G protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20691
95 % 2 4 17785
90 % 2 4 17313
70 % 2 4 16013
50 % 2 4 13990
40 % 2 4 12515
30 % 2 4 10741

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.