Sequence Similarity Clusters for the Entities in PDB 3VR4

Entity #1 | Chains: A,B,C
V-type sodium ATPase catalytic subunit A protein, length: 600 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 3042
95 % 1 5 3776
90 % 1 5 3801
70 % 1 5 3740
50 % 2 35 535
40 % 2 35 572
30 % 2 35 578
Entity #2 | Chains: D,E,F
V-type sodium ATPase subunit B protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 5 3060
95 % 1 5 3791
90 % 1 5 3816
70 % 1 5 3751
50 % 5 20 800
40 % 5 20 828
30 % 5 20 824
Entity #3 | Chains: G
V-type sodium ATPase subunit D protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 18628
95 % 2 4 16289
90 % 2 4 15918
70 % 2 4 14794
50 % 2 4 12947
40 % 2 4 11575
30 % 2 10 3740
Entity #4 | Chains: H
V-type sodium ATPase subunit G protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 20852
95 % 2 4 17893
90 % 2 4 17420
70 % 2 4 16116
50 % 2 4 14074
40 % 2 4 12586
30 % 2 4 10807

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.