Sequence Similarity Clusters for the Entities in PDB 3VR4

Entity #1 | Chains: A,B,C
V-type sodium ATPase catalytic subunit A protein, length: 600 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 8 1787
95 % 1 8 2354
90 % 1 8 2417
70 % 1 8 2405
50 % 2 42 494
40 % 2 42 531
30 % 2 42 534
Entity #2 | Chains: D,E,F
V-type sodium ATPase subunit B protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 8 1810
95 % 1 8 2373
90 % 1 8 2433
70 % 1 8 2419
50 % 5 24 763
40 % 5 24 795
30 % 5 24 786
Entity #3 | Chains: G
V-type sodium ATPase subunit D protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 7 10311
95 % 2 7 10345
90 % 2 7 10224
70 % 2 7 9727
50 % 2 7 8822
40 % 2 7 8073
30 % 2 14 3237
Entity #4 | Chains: H
V-type sodium ATPase subunit G protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 7 10598
95 % 2 7 10620
90 % 2 7 10483
70 % 2 7 9972
50 % 2 7 9026
40 % 2 7 8263
30 % 2 7 7276

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.