Sequence Similarity Clusters for the Entities in PDB 3VR4

Entity #1 | Chains: A,B,C
V-type sodium ATPase catalytic subunit A protein, length: 600 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 1916
95 % 1 8 2497 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.4
PDBFlex
90 % 1 8 2559
70 % 1 8 2552
50 % 2 47 456
40 % 2 47 500
30 % 2 47 489
Entity #2 | Chains: D,E,F
V-type sodium ATPase subunit B protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 1943
95 % 1 8 2518 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 1 8 2577
70 % 1 8 2567
50 % 5 28 658
40 % 5 28 688
30 % 5 28 682
Entity #3 | Chains: G
V-type sodium ATPase subunit D protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 10901
95 % 2 7 10886 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.7
PDBFlex
90 % 2 7 10747
70 % 2 7 10199
50 % 2 7 9240
40 % 2 7 8449
30 % 2 18 2782
Entity #4 | Chains: H
V-type sodium ATPase subunit G protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 11196
95 % 2 7 11173 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 2 7 11022
70 % 2 7 10454
50 % 2 7 9454
40 % 2 7 8644
30 % 2 7 7607

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures