Sequence Similarity Clusters for the Entities in PDB 3VR4

Entity #1 | Chains: A,B,C
V-type sodium ATPase catalytic subunit A protein, length: 600 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 8 1626
95 % 1 8 2172
90 % 1 8 2230
70 % 1 8 2223
50 % 2 38 502
40 % 2 38 537
30 % 2 38 538
Entity #2 | Chains: D,E,F
V-type sodium ATPase subunit B protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 8 1652
95 % 1 8 2189
90 % 1 8 2244
70 % 1 8 2236
50 % 5 23 713
40 % 5 23 752
30 % 5 23 757
Entity #3 | Chains: G
V-type sodium ATPase subunit D protein, length: 217 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 7 9577
95 % 2 7 9603
90 % 2 7 9496
70 % 2 7 9015
50 % 2 7 8209
40 % 2 7 7539
30 % 2 13 3262
Entity #4 | Chains: H
V-type sodium ATPase subunit G protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 7 9840
95 % 2 7 9852
90 % 2 7 9729
70 % 2 7 9227
50 % 2 7 8389
40 % 2 7 7707
30 % 2 7 6811

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.