Sequence Similarity Clusters for the Entities in PDB 3VR3

Entity #1 | Chains: A,B,C
V-type sodium ATPase catalytic subunit A protein, length: 600 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 1778
95 % 7 8 2341 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.3
PDBFlex
90 % 7 8 2405
70 % 7 8 2394
50 % 25 42 488
40 % 25 42 527
30 % 25 42 528
Entity #2 | Chains: D,E,F
V-type sodium ATPase subunit B protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 8 1801
95 % 7 8 2361 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 7 8 2422
70 % 7 8 2411
50 % 14 24 756
40 % 14 24 787
30 % 14 24 780

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.