Sequence Similarity Clusters for the Entities in PDB 3VR2

Entity #1 | Chains: A,B,C
V-type sodium ATPase catalytic subunit A protein, length: 600 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 1859
95 % 3 8 2433 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.4
PDBFlex
90 % 3 8 2499
70 % 3 8 2489
50 % 14 46 456
40 % 14 46 498
30 % 14 46 497
Entity #2 | Chains: D,E,F
V-type sodium ATPase subunit B protein, length: 465 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 8 1886
95 % 3 8 2455 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 3 8 2518
70 % 3 8 2505
50 % 9 27 671
40 % 9 27 703
30 % 9 27 698

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures