Sequence Similarity Clusters for the Entities in PDB 3VPB

Entity #1 | Chains: A,B,C,D
Putative acetylornithine deacetylase protein, length: 282 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 9039
95 % 1 2 9297 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 1 2 9212
70 % 1 2 8835
50 % 1 2 8027
40 % 1 2 7395
30 % 1 7 2448
Entity #2 | Chains: E,F
Alpha-aminoadipate carrier protein lysW protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50399
95 % 1 1 37595 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 35867
70 % 1 1 31850
50 % 1 1 27195
40 % 1 1 24011
30 % 1 1 20374

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures