Sequence Similarity Clusters for the Entities in PDB 3VNW

Entity #1 | Chains: A
Cytochrome c-552 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 10117
95 % 5 7 9942 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 5 7 9807
70 % 5 7 9386
50 % 5 7 8535
40 % 5 7 7792
30 % 5 7 6760

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1C52 1 A CYTOCHROME-C552 OXIDIZED STATE (FE+++) 274
2 1QYZ 1 A Cytochrome c-552 274
3 1R0Q 1 A Cytochrome c-552 274
4 1DT1 1 A CYTOCHROME C552 274
5 3VNW 1 A Cytochrome c-552 274
6 1FOC 1 A, B CYTOCHROME RC557 HEME INVERSION 274
7 2FWL 1 A Cytochrome c-552 274