Sequence Similarity Clusters for the Entities in PDB 3VMY

Entity #1 | Chains: A,B,C,D
Voltage-gated hydrogen channel 1 protein, length: 51 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 5629
95 % 3 4 4338 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 3 4 4367
70 % 3 5 2221
50 % 3 5 2202
40 % 3 5 2197
30 % 3 5 2094

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures