Sequence Similarity Clusters for the Entities in PDB 3VMX

Entity #1 | Chains: A,B,C,D
Voltage-gated hydrogen channel 1 protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 5760
95 % 2 4 4440 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 2 4 4479
70 % 2 5 2283
50 % 2 5 2263
40 % 2 5 2251
30 % 2 5 2143

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures