Sequence Similarity Clusters for the Entities in PDB 3VHT

Entity #1 | Chains: A
Green fluorescent protein protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50551
95 % 229 255 70 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 244 297 38
70 % 247 301 33
50 % 248 303 79
40 % 258 316 96
30 % 440 531 15
Entity #2 | Chains: B
Green fluorescent protein,ATPase WRNIP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50552
95 % 1 1 41793
90 % 3 4 13525
70 % 3 4 12681
50 % 3 4 11280
40 % 3 4 10133
30 % 3 4 8639
Entity #3 | Chains: C
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 412 4
95 % 195 436 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 204 449 6
70 % 217 485 8
50 % 223 506 10
40 % 229 526 15
30 % 270 675 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5NVG 1 A Polyubiquitin-B 9606
2 4XOF 1 A Ubiquitin 9606
3 3A9J 1 A Ubiquitin 10090
4 3A9J 2 B Ubiquitin 10090
5 5GOB 1 A Ubiquitin 9606
6 5GOB 2 B D-ubiquitin 9606
7 5W46 1 A, B Polyubiquitin-B 9606
8 5GOD 1 A, B Ubiquitin 9606
9 5GOD 2 C, D D-ubiquitin 9606
10 5XVE 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
11 3NHE 2 B Ubiquitin 9606
12 5DK8 1 A, B Polyubiquitin-B Ubiquitin, UNP residues 2-75 9606
13 1YJ1 1 A, B, C Ubiquitin residues 1-76
14 5NL4 1 A, B, C Polyubiquitin-C 9606
15 5V1Y 2 C, D Ubiquitin 9606
16 4M0W 2 B Ubiquitin 9913
17 4Y1H 1 A Ubiquitin-40S ribosomal protein S27a K33 linked tri-Ubiquitin. 9913
18 1YIW 1 A, B, C Ubiquitin 9031
19 1OGW 1 A UBIQUITIN LEF IS (4S)-5-FLUORO-L-LEUCINE RESIDUES 1-76 9606
20 2WWZ 1 A, B UBIQUITIN 9913
21 5KYC 2 C Polyubiquitin-B UNP residues 1-76 9606
22 4IUM 2 B Ubiquitin UNP residues 1-75 9606
23 3A9K 1 A Ubiquitin 10090
24 3A9K 2 B Ubiquitin 10090
25 5KYF 2 C Polyubiquitin-B UNP residues 1-76 9606
26 1XD3 2 B, D UBC protein 9606
27 5NLF 1 A, B, C Polyubiquitin-C 9606
28 4ZPZ 1 A, B Polyubiquitin-B ubiquitin, UNP residues 1-73 9606
29 4UN2 1 A UBIQUITIN 9606
30 4PIH 1 A, B Ubiquitin 9606
31 2ZCC 1 A, B, C Ubiquitin 9913
32 4PIJ 1 A, B Ubiquitin 9606
33 5NLI 1 A, B, C Polyubiquitin-C 9606
34 5YT6 1 A, C, E, G Ubiquitin 9606
35 4V3L 2 B, D POLYUBIQUITIN-C G76 IN CHAIN B IS COVALENTLY LINKED TO K85 SIDE CHAIN IN CHAIN A. RESIDUES 77-152 9606
36 4LJO 2 B Polyubiquitin-C unp residues 77-152 9913
37 3BY4 2 B Ubiquitin 9606
38 6FDK 2 B Polyubiquitin-B 9606
39 5K9P 1 A Polyubiquitin-B 9606
40 5NLJ 1 A, B, C Polyubiquitin-B 9606
41 5KYD 1 D Polyubiquitin-B UNP residues 1-76 9606
42 4XYZ 1 A, B Polyubiquitin-C UNP residues 77-152 9913
43 3M3J 1 A, B, C, D, E, F Ubiquitin 9913
44 2ZNV 2 B, E Ubiquitin 10090
45 2ZNV 3 C, F Ubiquitin 10090
46 5OXH 1 A Ubiquitin T66V/L67N mutant 9606
47 5EMZ 1 A, C, E Polyubiquitin-B 9606
48 5EMZ 2 B, D, F Polyubiquitin-B 9606
49 6B7M 2 B, C Polyubiquitin-C 9606
50 3VUX 1 A, B, C Polyubiquitin-C Ubiquitin 9606
51 2ZCB 1 A, B, C Ubiquitin 9606
52 5OXI 1 A, B Ubiquitin L67S mutant 9606
53 4K1R 2 B, D Polyubiquitin-C 9606
54 3PRP 2 B, D Ubiquitin 9606 3.4.19.12 | Details
55 4I6N 2 B, D Ubiquitin 9606
56 5AF5 1 A POLYUBIQUITIN-C 9606
57 5J8P 1 A ubiquitin 9606
58 5J8P 2 B D-ubiquitin 9606
59 4K7U 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
60 6EI1 2 B Polyubiquitin-B 9606
61 6FGE 2 C Polyubiquitin-B 9606
62 2J7Q 2 B, D UBIQUITIN THE C-TERMINAL GLY 76 IS REPLACED BY THE VINYLMETHYLESTER MOIETY UBIQUITIN FUSED TO VINYLMETHYLESTER, UBVME, RESIDUES 1-75 9606
63 3NS8 1 A, B Ubiquitin 9606
64 5GOJ 1 A Ubiquitin 9606
65 5GOJ 2 B D-ubiquitin 9606
66 1UBI 1 A UBIQUITIN 9606
67 2D3G 1 A, B ubiquitin 9913
68 5GOC 1 A Ubiquitin 9606
69 5GOC 2 D D-ubiquitin 9606
70 5X3N 1 A Polyubiquitin-B UNP residues 1-76 9606
71 5XIU 2 B Ubiquitin-40S ribosomal protein S27a 10090
72 5TXK 2 B Polyubiquitin-B 9606
73 5WFI 2 C, D Ubiquitin 9606
74 1UBQ 1 A UBIQUITIN 9606
75 6B7O 2 B, C Polyubiquitin-C 9606
76 4ZFR 2 B ubiquitin unp residues 77-152 9606
77 4MSM 2 B, D Ubiquitin UNP residues 77-152 9606
78 6GLC 2 B Polyubiquitin-B 9606
79 3N32 1 A Ubiquitin 9606
80 5L8H 2 B Polyubiquitin-B Recombinant expression followed by chemical synthesis. 9606
81 3ONS 1 A Ubiquitin 9606
82 5XU8 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
83 3MHS 4 D Ubiquitin 9606
84 5M93 1 A, B, C Polyubiquitin-B 9606
85 4K7W 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
86 2HD5 2 B Polyubiquitin residues 1-76 9913
87 5NMC 1 A, B, C Polyubiquitin-C 9606
88 5GOI 1 A, B Ubiquitin 9606
89 5GOI 2 C, D D-ubiquitin 9606
90 1WRD 2 B Ubiquitin 9913
91 5GVI 2 B ubiquitin 10090
92 5GVI 3 C ubiquitin 10090
93 4K7S 1 A, B, C ubiquitin UNP residues 1-73 9606 6.3.2.19 | Details
94 2FCS 1 A, B Ubiquitin residues 1-76
95 4Q5E 2 B Polyubiquitin 4932 6.3.2.19 | Details
96 5V1Z 2 C, D Ubiquitin 9606
97 3ALB 1 A, B, C, D ubiquitin 9606
98 5D0M 3 B Polyubiquitin-B UNP residues 1-76 9606
99 5XIS 2 B, E Ubiquitin-40S ribosomal protein S27a 10090
100 5XIS 3 C, F Ubiquitin-40S ribosomal protein S27a 10090
101 4PIG 1 A, B, C, D Ubiquitin 9606
102 5X3M 1 A Polyubiquitin-B 9606
103 5X3M 2 D D-ubiquitin D-Ub-S65E-NH2 9606
104 5NL5 1 A, B, C Polyubiquitin-B 9606
105 4MSQ 2 B, D Ubiquitin UNP residues 77-152 9606
106 4LDT 2 B Ubiquitin aldehyde 9606
107 4LDT 4 D Ubiquitin 9606
108 3VUW 1 A, B, C Polyubiquitin-C Ubiquitin 9606
109 3TMP 2 B, D, F, H Polyubiquitin-C Ubiquitin-like 1 9606
110 2QHO 1 A, C, E, G Ubiquitin 9913
111 3H7P 1 A Ubiquitin 9606
112 3H7P 2 B Ubiquitin 9606
113 4WZP 1 A, B, C, D, E, F, G, H ubiquitin phosphorylation at Ser65 UNP residues 1-76 9606
114 3EHV 1 A, B, C Ubiquitin 9606 6.3.2.19 | Details
115 5GO7 1 A Ubiquitin 9606
116 5GO7 2 B D-ubiquitin 9606
117 1P3Q 2 U, V Ubiquitin 9913
118 2OOB 2 B Ubiquitin 9913
119 5ULF 2 B, D Ubiquitin 9606
120 5KYE 2 C, D Polyubiquitin-B UNP residues 1-76 9606
121 5ULH 2 B Ubiquitin 9606
122 3HM3 1 A, B, C, D Ubiquitin 9606
123 5LRW 2 B, D Polyubiquitin-B Gly76 was replaced with 2-bromoethylamine 9606
124 5GOK 1 A Ubiquitin 9606
125 5GOK 2 B D-ubiquitin 9606
126 4WLR 3 C Polyubiquitin-B 9606
127 3WWQ 1 A, D, G, J Ubiquitin 10090
128 3WWQ 2 B, E, H, K Ubiquitin 10090
129 3EFU 1 A Ubiquitin 9606
130 4Q5H 2 B Polyubiquitin 4932 6.3.2.19 | Details
131 5AF4 1 A, B, C, D, E, F, G, H UBIQUITIN ISOPEPTIDE LINKAGES BETWEEN A76 C AND B33 NZ, C76 C AND D33 NZ, E76 C AND F33 NZ 9606
132 4V3K 2 B, E POLYUBIQUITIN-C LYS85 IN CHAINS A AND D IS COVALENTLY LINKED TO GLY76 IN CHAINS B AND E, RESPECTIVELY. RESIDUES 77-152 9606
133 4IG7 2 B Ubiquitin 9606
134 2JF5 1 A, B UBIQUITIN ISO-PEPTIDE LINK BETWEEN A-LYS63 AND B-GLY76 9606
135 5MN9 1 A, B Ubiquitin-40S ribosomal protein S27a 9913
136 5WVO 1 A, B Ubiquitin 9606
137 1UZX 2 B UBIQUITIN 9913
138 5YDR 1 A, D Polyubiquitin-B UNP residues 1-73 9606
139 1S1Q 2 B, D ubiquitin 9606
140 4LJP 2 B Polyubiquitin-C unp residues 77-152 9913
141 3VUY 1 A, B, C Polyubiquitin-C Ubiquitin 9606
142 3PHW 2 B, D, F, H Ubiquitin-40S ribosomal protein S27a UNP residues 1-75 9606
143 4PQT 2 B Protein UBBP4 unp residues 77-152 9606
144 5BZ0 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin from bovine erythrocytes 9913
145 2GBR 1 A, B, C Ubiquitin 9606
146 4XKL 1 A, C Ubiquitin 9606
147 4FJV 2 B, D Polyubiquitin-C 9606
148 5DFL 1 B Ubiquitin 9606
149 2C7N 2 B, D, F, H, J, L UBIQUITIN 9913
150 5GOH 1 A Ubiquitin 9606
151 5GOH 2 D D-ubiquitin 9606
152 3ZNI 4 D, H, L, P POLYUBIQUITIN-C CARBONYL CARBON OF G76 IN CHIANS D, H, L AND P FORMS AN ISOPEPTIDE LINKAGE WITH THE SIDECHAIN OF K85 IN CHAINS C, G, K AND O, RESPECTIVELY. GSGGS LINKER AT THE N- TERMINUS OF PROTEIN RESULTED FROM CLONING RESIDUES 77-152 9606
153 2G45 2 B, E Ubiquitin 9606
154 6AQR 4 D Polyubiquitin-C 9606
155 5MNJ 2 B, F Polyubiquitin-B gsggs linker at the N-terminus resulted from cloning. G76 in chain B is covalently linked to K85 side chain in Chain A. 9606
156 5ZQ3 2 C, D Ubiquitin 9606
157 5ZQ4 2 C, D ubiquitin 9606
158 4RF1 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
159 5JBY 1 A, C, E ubiquitin 9606
160 5JBY 2 B, D, F D-ubiquitin 9606
161 5IFR 2 B Polyubiquitin-B 9606
162 2IBI 2 B Ubiquitin 9606
163 5L6H 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
164 5GOG 1 A Ubiquitin 9606
165 5GOG 2 B D-ubiquitin 9606
166 4AUQ 3 C, F POLYUBIQUITIN-C UBIQUITIN, RESIDUES 1-76 9606
167 4NNJ 2 B, D, E Uba1 UNP residues 1-76 4932
168 4Z9S 1 A, B, C, D Ubiquitin-40S ribosomal protein S27a UNP RESIDUES 1-76 9913
169 2XEW 1 A, B, C, D, E, F, G, H, I, J, K, L UBIQUITIN UBIQUITIN POLYMER LINKED THROUGH LYS11 IN AN ISOPEPTIDE LINKAGE 9606
170 2WDT 2 B, D UBIQUITIN C-TERMINAL GLY76 OF WILDTYPE UBIQUITIN IS REPLACED BY A VINYL METHYLESTER MOIETY (UBVME) RESIDUES 1-75 9606
171 1AAR 1 A, B DI-UBIQUITIN 9913
172 4AP4 3 C, F UBIQUITIN C ISOPEPTIDE AMIDE LINKED TO UBCH5A (CHAIN B AND CHAIN E) RESIDUES 76-152 9606
173 4UEL 2 B POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH-L5 9606
174 4ZFT 2 B, D Polyubiquitin-B unp residues 77-152 9606
175 2WX0 1 A, B, E, F UBIQUITIN 9913
176 3A1Q 1 A, D Ubiquitin 10090
177 3A1Q 2 B, E Ubiquitin 10090
178 5HPL 2 C, D Ubiquitin variant R5.4 9606
179 5TR4 2 B, D Ubiquitin 9913
180 4BOS 2 C, E POLYUBIQUITIN-C RESIDUES 1-76 9606
181 3H7S 1 A, B Ubiquitin 9606
182 3C0R 2 B, D Ubiquitin 9606
183 5AIU 3 C, F POLYUBIQUITIN-C CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F UNP RESIDUES 1-76 9606
184 4S22 1 A, B, C, D Ubiquitin residues 77-152 9913
185 2C7M 2 B UBIQUITIN 9913
186 1TBE 1 A, B TETRAUBIQUITIN 9606
187 3PT2 2 B Ubiquitin B 9606
188 5VZW 2 C, D Ubiquitin 9606
189 3PRM 2 B, D Ubiquitin 9606 3.4.19.12 | Details
190 4R62 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin 9606
191 5EYA 3 C, D Polyubiquitin-B UNP residues 1-76 9606
192 5GO8 1 A ubiquitin 9606
193 5GO8 2 B D-ubiquitin 9606
194 3A33 2 B Ubiquitin 9606
195 3VHT 3 C Ubiquitin 10090
196 5XIT 1 D, F Ubiquitin-40S ribosomal protein S27a 10090
197 5XIT 3 B, H Ubiquitin-40S ribosomal protein S27a 10090
198 6ASR 1 A, C Ubiquitin residues 1-76 9606
199 2FCN 1 A, B Ubiquitin residues 1-76
200 4DHJ 2 B, F, J, M Ubiquitin aldehyde 9606
201 4DHJ 3 D, H Ubiquitin 9606
202 3ZNH 2 B POLYUBIQUITIN-B GLY76 IS REPLACED WITH A PROPARGYL GROUP 9606
203 4BBN 2 C POLYUBIQUITIN-B RESIDUES 1-76 9913
204 4BBN 3 F POLYUBIQUITIN-B RESIDUES 229-304 9913
205 4NQL 2 B Ubiquitin 10090
206 4NQL 3 C Ubiquitin 10090
207 1NBF 2 C, D Ubiquitin aldehyde 9606
208 2O6V 1 A, C, E, G Ubiquitin 9606
209 2O6V 2 B, F Ubiquitin 9606
210 2O6V 3 D, H Ubiquitin 9606
211 3OFI 2 C, D Ubiquitin 9606
212 3AUL 1 A, B Polyubiquitin-C Ubiquitin 9606
213 3UGB 2 B Polyubiquitin-C unp residues 1-76 9606
214 5JBV 1 A Ubiquitin 9606
215 5JBV 2 B D-ubiquitin 9606
216 5X3O 1 A Polyubiquitin-B UNP residues 1-76 9606
217 5X3O 2 D D-ubiquitin 9606
218 5ULK 2 B Ubiquitin 9606
219 5ZQ5 2 B, D Ubiquitin 9606
220 6FX4 2 B, D Polyubiquitin-B 35525
221 3NOB 1 A, B, C, D, E, F, G, H Ubiquitin 9606
222 3IFW 2 B Ubiquitin 9606
223 2FCM 1 A, B Ubiquitin residues 1-76
224 4KSK 2 C, D Polyubiquitin-C unp residues 76-152 9606
225 5L6J 2 B, D Ubiquitin-40S ribosomal protein S31 4932
226 5OHL 2 I, J, K, L, M, N, O, P Polyubiquitin-B 9606
227 3I3T 2 B, D, F, H Ubiquitin 9606
228 5FER 3 C, F Ubiquitin-40S ribosomal protein S27a 9913
229 5OHK 2 B Polyubiquitin-B 9606
230 1CMX 2 B, D PROTEIN (UBIQUITIN YUH1-UBAL) UBIQUITIN C-TERMINUS MODIFIED TO AN ALDEHYDE ALL 9606 3.1.2.15 | Details
231 3OJ3 1 A, B, C, D, E, F, G, H Ubiquitin Ubiquitin, UNP residues 1-76 9606
232 5N38 2 B Polyubiquitin-B Ser65 is phosphorylated 9606
233 3O65 2 B, D, F, H Ubiquitin 9606
234 5CRA 2 C, D Polyubiquitin-B UNP residues 1-75 9606
235 5U4P 3 C Ubiquitin-40S ribosomal protein S31 4932
236 5L6I 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
237 5XPK 1 A Ubiquitin 9606
238 5XPK 2 B D-ubiquitin 9606
239 5XDP 1 B D-ubiquitin 9606
240 5XDP 2 A ubiquitin-B K11/48-branched teraubiquitin 9606
241 5D0K 3 B, E, H, K Polyubiquitin-B UNP residues 1-76 9606
242 5OHV 1 A, C Ubiquitin 9606
243 5TUT 2 B Ubiquitin 9606
244 3OLM 2 D Ubiquitin 4932
245 3CMM 2 B, D Ubiquitin 559292
246 4MDK 2 E, F, G, H Ubiquitin UNP residues 76-152 9606
247 5N2W 2 B Polyubiquitin-B Ser65 is phosphorylated to give SEP65 9606
248 4MM3 1 A Ubiquitin UNP residues 1-76 9606
249 2FIF 1 A, C, E Ubiquitin 9913
250 5JQS 2 D Ubiquitin-40S ribosomal protein S27a 9913
251 5YDK 2 B, E, H, K Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
252 5YDK 3 C, D, I, J Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
253 2XBB 2 C, D UBIQUITIN 9913
254 2GMI 3 C Ubiquitin 9606
255 3DVG 3 X Ubiquitin D77 9606
256 3DVG 4 Y Ubiquitin 9606
257 1WR6 2 E, F, G, H ubiquitin 9913
258 3LDZ 1 E, F, G Ubiquitin 9913
259 3PTF 2 C, D Polyubiquitin-B Ubiquitin 9606
260 5ZQ7 2 B, D Ubiquitin 9606
261 3RUL 1 A, B, C, D Ubiquitin 9606
262 5BNB 2 E, F, G, I Polyubiquitin-B 9606
263 5LRX 2 B, D Polyubiquitin-B Gly76 was replaced with propargylamide 9606
264 5CAW 2 B, D Polyubiquitin-B phosphorylated at Ser65 Gly76 exchanged with chemical probe, bromopropylamine. The bromide was lost during the coupling. 9606
265 4XOK 1 A, B, C Ubiquitin 9606
266 3MTN 2 B, D UBIQUITIN VARIANT UBV.21.4 9606
267 5ZQ6 2 B, D Ubiquitin 9606
268 5LRV 2 B Polyubiquitin-B Lys11 was replaced with a diaminobutyric acid (DAB) residue 9606
269 5LRV 3 C Polyubiquitin-B Gly76 was replaced with a ligation handle for diubiquitin probe generation 9606
270 3DVN 3 U, X Ubiquitin D77 9606
271 3DVN 4 V, Y Ubiquitin 9606
272 5L8W 3 C Polyubiquitin-B Recombinant expression followed by chemical synthesis 9606
273 1F9J 1 A, B TETRAUBIQUITIN 9606
274 2FID 1 A Ubiquitin 9913
275 5OHP 2 B, C Polyubiquitin-B 9606
276 4HXD 1 A, C Polyubiquitin-C 9606 3.4.19.12 | Details
277 1YD8 1 U, V UBIQUIN 9913
278 4BOZ 2 B, C, E UBIQUITIN-C 9606
279 3WXG 2 B, E Ubiquitin 10090
280 3WXG 3 C, F Ubiquitin UNP residues 1-72 10090
281 6CP2 3 C Polyubiquitin-B 9606
282 4XKH 1 A, B, D, F, G, I Polyubiquitin-C UNP RESIDUES 77-152 9913
283 3IHP 2 C, D Ubiquitin 9606
284 5LN1 2 U Polyubiquitin-B 9606
285 3K9P 2 B Ubiquitin 9606
286 4BVU 3 C UBIQUITIN OXYESTER LINK BETWEEN G76 AND UBCH5C S85 9606
287 3JSV 1 A Ubiquitin 9606
288 3JSV 2 B Ubiquitin 9606
289 3TBL 2 D, E Ubiquitin 9606
290 2HTH 1 A Ubiquitin 9606
291 3KW5 2 B Ubiquitin 9606
292 6EQI 1 A Ubiquitin 9606
293 5E6J 2 B, E ubiquitin 32630
294 5E6J 3 C, F Polyubiquitin-B 32630
295 2XK5 1 A UBIQUITIN 9606
296 2XK5 2 B UBIQUITIN 9606
297 4JQW 2 C Polyubiquitin-C Ubiquitin 9606
298 4RF0 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
299 3KVF 2 B Ubiquitin 9606
300 6FYH 2 B Ubiquitin 35525
301 5AF6 1 A, B, C, D, E UBIQUITIN ISOPEPTIDE BONDS ACROSS BETWEEN CHAINS, A76 C AND D33 NZ, B76 C AND A33 NZ, C76C AND B33 NZ, E76 C AND C33 NZ. ISOPEPTIDE BOND ACROSS THE ASU FOR, D76 C AND E33 NZ SYMM 9606
302 3H1U 1 A, B Ubiquitin 9913
303 5JTJ 2 B Polyubiquitin-B 9606
304 2WX1 1 A, B UBIQUITIN 9913
305 4WUR 2 B Polyubiquitin-B UNP residues 1-76 9606
306 4S1Z 1 A, B, C, D, E Ubiquitin residues 1-76 9606
307 4XOL 1 A, B Ubiquitin 9606
308 5JP3 2 B, D, F, H Polyubiquitin-B 9606
309 4P4H 3 S, T, U, W, X Ubiquitin-60S ribosomal protein L40 9606
310 5O44 1 A, E Ubiquitin 7370
311 5O44 2 B, C Polyubiquitin-B 9606
312 5O44 3 D, F Polyubiquitin-B 9606
313 3PHD 2 E, F, G, H Polyubiquitin 9606
314 5YIK 2 C, D, F ubiquitin UNP RESIDUES 1-76 9606
315 3N30 1 A, B Ubiquitin 9606
316 3ZLZ 1 A, B UBIQUITIN TRI-UBIQUITIN CHAIN LINKED VIA LYS6. K48R IN BOTH MOLECULES. ISOPEPTIDE LINKAGES ARE NOT RESOLVED. 9606
317 3JVZ 3 X, Y Ubiquitin 9606
318 4DHZ 2 B Ubiquitin aldehyde 9606
319 4DHZ 3 E Ubiquitin 9606
320 5YIJ 2 C, D, G Ubiquitin UNP RESIDUES 1-76 9606
321 5UDH 3 E Ubiquitin C variant Hexa-his N-terminal tagged protein UNP residues 17-92 9606
322 5AIT 3 C, F POLYUBIQUITIN-C UNP RESIDUES 1-76 9913
323 3VFK 1 A ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala 9606
324 3JW0 3 X, Y Ubiquitin 9606
325 4LCD 3 E, F Ubiquitin UNP residues 1-75 9606
326 4DDG 2 D, E, F, G, H, I, M, N, O, P, Q, R Polyubiquitin-C 9606
327 5JTV 2 B, D, F, H Polyubiquitin-B 9606
328 5OHN 2 B, D Polyubiquitin-B 9606
329 2FCQ 1 A, B Ubiquitin residues 1-76 9031
330 3EEC 1 A, B Ubiquitin 9606
331 5VNZ 3 C, F Ubiquitin 9606
332 4NQK 2 E, F, G, H, I, J Ubiquitin UNP residues 76-152 9606
333 4DDI 2 D, E, F, G, H, I Polyubiquitin-C 9606
334 5H7S 1 E, F Ubiquitin-like 1 9606
335 5EDV 3 E, F, G, H Polyubiquitin-B UNP residues 1-76 9606
336 4UF6 2 B, E, H, K POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH- L5 9606
337 5OHM 1 A, C, E, G, I, K Polyubiquitin-C 9598
338 4ZUX 10 X, c, h, m Polyubiquitin-B 9606
339 2DX5 2 B Ubiquitin 9913
340 3OJ4 2 B, E Ubiquitin Ubiquitin, UNP residues 1-76 9606
341 5VO0 3 C, F Ubiquitin 9606
342 6DJW 2 B Ubiquitin 9913
343 2AYO 2 B Ubiquitin 9606
344 5KHY 1 A Polyubiquitin-B 9606
345 5KHY 2 B Polyubiquitin-B 9606
346 6DJX 2 B Ubiquitin 9913
347 4JIO 2 U Ubiquitin 9606
348 4WHV 3 A, F, G, L Polyubiquitin-B unp residues 1-76 9606
349 6FTX 8 N, O Polyubiquitin-B 9606
350 5VZM 1 A Ubiquitin UNP residues 1-76 9606
351 5XK4 1 A Polyubiquitin-B UNP residues 1-76 9606
352 5XK5 1 A Polyubiquitin-B UNP residues 1-76 9606
353 5VEY 2 B Polyubiquitin-B 9606
354 5VF0 1 A Polyubiquitin-B 9606
355 5XBO 1 A Polyubiquitin-B UNP residues 1-76 9606
356 5UJL 1 A, B Ubiquitin residues 1-76 9606
357 5UJN 1 A, B Ubiquitin 9606
358 5GJQ 34 y Polyubiquitin-B UNP RESIDUES 1-76 9606
359 5KGF 8 M, O Ubiquitin 9606
360 2NBD 1 A entity 9606
361 2NBE 1 A entity 9606
362 5A5B 9 9 UBIQUITIN ALDEHYDE 9606
363 2N3U 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
364 2N3V 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
365 2N3W 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
366 2N2K 1 A ubiquitin 9606
367 2N2K 2 B ubiquitin 9606
368 2N13 2 B Ubiquitin 9606
369 2N13 3 C Ubiquitin 9606
370 2MWS 1 A Ubiquitin UNP residues 1-76 9606
371 2MUR 2 B Ubiquitin 9606
372 2MSG 1 A Ubiquitin UNP residuse 1-72 9606
373 2MRO 1 A Polyubiquitin-B Human Ubiquitin 9606
374 2MRE 1 A Polyubiquitin-C unp residues 1-76 9606
375 2MOR 1 A Ubiquitin UNP residues 1-76 9606
376 2MJB 1 A Ubiquitin-60S ribosomal protein L40 Ubiquitin-like 3 domain 9606
377 2MJ5 1 A Polyubiquitin-C UNP residuses 1-76 9606
378 2MI8 1 A Ubiquitin 9606
379 2RU6 1 A Ubiquitin 9606
380 2MCN 2 B Ubiquitin UNP residues 1-76 9606
381 2MBQ 1 A, B Ubiquitin UNP residues 1-76 9606
382 2MBO 1 A, B Ubiquitin UNP residues 1-76 9606
383 2MBH 2 A Ubiquitin 9606
384 2MBB 2 B Polyubiquitin-B UNP P0CG47 residues 1-76 9606
385 2LZ6 1 A Ubiquitin 9606
386 2LVO 1 A Ubiquitin 9606
387 2LVP 1 A, B Ubiquitin 9606
388 2LVQ 1 A, B Ubiquitin 9606
389 2RSU 1 A Ubiquitin 9606
390 2LJ5 1 A Ubiquitin 9606
391 2LD9 1 A Ubiquitin 9606
392 2L3Z 1 A Ubiquitin UNP Residues 1-76 9606
393 2L0T 1 A Ubiquitin 9606
394 2L0F 1 A Ubiquitin 9606
395 2L00 2 B Ubiquitin ubiquitin core domain 4932
396 2RR9 1 A, B ubiquitin 9606
397 2KWV 2 B Ubiquitin 9606
398 2KWU 2 B Ubiquitin 9606
399 2KTF 1 A Ubiquitin 9606
400 2KOX 1 A Ubiquitin 9606
401 2KN5 1 A Ubiquitin 9606
402 2KLG 1 A Ubiquitin 9606
403 2KJH 2 B Ubiquitin 9606
404 2KHW 2 B Ubiquitin 9606
405 2KDE 2 B, C Ubiquitin 8355
406 2KDF 2 B, C Ubiquitin 9606
407 2K8B 1 A Ubiquitin 9606
408 2K8C 1 A Ubiquitin 9606
409 2K6D 2 B Ubiquitin ubiquitin 9606
410 2K39 1 A Ubiquitin 8355
411 2JZZ 1 A Ubiquitin 9606
412 2JY6 1 A Ubiquitin protein 9606
413 2JWZ 1 A Ubiquitin 4932
414 2JT4 2 B Ubiquitin SH3 domain sequence database residues 350-420 4932
415 2Z59 2 B Ubiquitin 9606
416 2JRI 2 B, C UBC protein sequence database residues 318-469 9606
417 2PE9 1 A, B Ubiquitin 9606
418 2PEA 1 A, B Ubiquitin 9606
419 2NR2 1 A Ubiquitin 9606
420 2G3Q 2 B Ubiquitin 4932
421 2DEN 2 B Ubiquitin 9606
422 2FUH 2 B Ubiquitin Ubiquitin 10116
423 1ZGU 2 B Ubiquitin 9606
424 2BGF 1 A, B DI-UBIQUITIN ISOPEPTIDE BOND BETWEEN GLY76A AND LYS48B 9606
425 1XQQ 1 A ubiquitin 9606
426 1WR1 1 A Ubiquitin 4932
427 1V80 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
428 1V81 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
429 1Q5W 2 B Ubiquitin 9606
430 1Q0W 2 B Ubiquitin 4932
431 1OTR 2 B Ubiquitin 4932
432 1G6J 1 A UBIQUITIN 9606
433 1FXT 2 B UBIQUITIN 9606
434 1D3Z 1 A PROTEIN (UBIQUITIN) 9606
435 1C3T 1 A PROTEIN (1D8 UBIQUITIN) 9606
436 1UD7 1 A PROTEIN (UBIQUITIN CORE MUTANT 1D7) 9606