Sequence Similarity Clusters for the Entities in PDB 3VHT

Entity #1 | Chains: A
Green fluorescent protein protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51667
95 % 237 264 67 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 252 306 32
70 % 255 310 30
50 % 256 312 78
40 % 266 325 89
30 % 452 544 15
Entity #2 | Chains: B
Green fluorescent protein,ATPase WRNIP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51668
95 % 1 1 42731
90 % 3 4 13884
70 % 3 4 12998
50 % 3 4 11521
40 % 3 4 10336
30 % 3 4 8809
Entity #3 | Chains: C
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 186 415 4
95 % 197 439 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 206 452 6
70 % 219 488 8
50 % 225 509 11
40 % 237 535 16
30 % 293 707 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5NVG 1 A Polyubiquitin-B 9606
2 4XOF 1 A Ubiquitin 9606
3 3A9J 1 A Ubiquitin 10090
4 3A9J 2 B Ubiquitin 10090
5 5GOB 1 A Ubiquitin 9606
6 5GOB 2 B D-ubiquitin 9606
7 5W46 1 A, B Polyubiquitin-B 9606
8 5GOD 1 A, B Ubiquitin 9606
9 5GOD 2 C, D D-ubiquitin 9606
10 5XVE 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
11 3NHE 2 B Ubiquitin 9606
12 5DK8 1 A, B Polyubiquitin-B Ubiquitin, UNP residues 2-75 9606
13 1YJ1 1 A, B, C Ubiquitin residues 1-76
14 5NL4 1 A, B, C Polyubiquitin-C 9606
15 5V1Y 2 C, D Ubiquitin 9606
16 4M0W 2 B Ubiquitin 9913
17 4Y1H 1 A Ubiquitin-40S ribosomal protein S27a K33 linked tri-Ubiquitin. 9913
18 1YIW 1 A, B, C Ubiquitin 9031
19 1OGW 1 A UBIQUITIN LEF IS (4S)-5-FLUORO-L-LEUCINE RESIDUES 1-76 9606
20 2WWZ 1 A, B UBIQUITIN 9913
21 5KYC 2 C Polyubiquitin-B UNP residues 1-76 9606
22 4IUM 2 B Ubiquitin UNP residues 1-75 9606
23 3A9K 1 A Ubiquitin 10090
24 3A9K 2 B Ubiquitin 10090
25 5KYF 2 C Polyubiquitin-B UNP residues 1-76 9606
26 1XD3 2 B, D UBC protein 9606
27 5NLF 1 A, B, C Polyubiquitin-C 9606
28 4ZPZ 1 A, B Polyubiquitin-B ubiquitin, UNP residues 1-73 9606
29 6E2B 1 A, C, E, G, I, P Ubiquitin 9913
30 4UN2 1 A UBIQUITIN 9606
31 4PIH 1 A, B Ubiquitin 9606
32 2ZCC 1 A, B, C Ubiquitin 9913
33 4PIJ 1 A, B Ubiquitin 9606
34 5NLI 1 A, B, C Polyubiquitin-C 9606
35 5YT6 1 A, C, E, G Ubiquitin 9606
36 4V3L 2 B, D POLYUBIQUITIN-C G76 IN CHAIN B IS COVALENTLY LINKED TO K85 SIDE CHAIN IN CHAIN A. RESIDUES 77-152 9606
37 4LJO 2 B Polyubiquitin-C unp residues 77-152 9913
38 3BY4 2 B Ubiquitin 9606
39 6FDK 2 B Polyubiquitin-B 9606
40 5K9P 1 A Polyubiquitin-B 9606
41 5NLJ 1 A, B, C Polyubiquitin-B 9606
42 5KYD 1 D Polyubiquitin-B UNP residues 1-76 9606
43 4XYZ 1 A, B Polyubiquitin-C UNP residues 77-152 9913
44 3M3J 1 A, B, C, D, E, F Ubiquitin 9913
45 2ZNV 2 B, E Ubiquitin 10090
46 2ZNV 3 C, F Ubiquitin 10090
47 5OXH 1 A Ubiquitin T66V/L67N mutant 9606
48 5EMZ 1 A, C, E Polyubiquitin-B 9606
49 5EMZ 2 B, D, F Polyubiquitin-B 9606
50 6B7M 2 B, C Polyubiquitin-C 9606
51 3VUX 1 A, B, C Polyubiquitin-C Ubiquitin 9606
52 2ZCB 1 A, B, C Ubiquitin 9606
53 5OXI 1 A, B Ubiquitin L67S mutant 9606
54 4K1R 2 B, D Polyubiquitin-C 9606
55 3PRP 2 B, D Ubiquitin 9606 3.4.19.12 | Details
56 4I6N 2 B, D Ubiquitin 9606
57 5AF5 1 A POLYUBIQUITIN-C 9606
58 5J8P 1 A ubiquitin 9606
59 5J8P 2 B D-ubiquitin 9606
60 4K7U 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
61 6EI1 2 B Polyubiquitin-B 9606
62 6FGE 2 C Polyubiquitin-B 9606
63 2J7Q 2 B, D UBIQUITIN THE C-TERMINAL GLY 76 IS REPLACED BY THE VINYLMETHYLESTER MOIETY UBIQUITIN FUSED TO VINYLMETHYLESTER, UBVME, RESIDUES 1-75 9606
64 3NS8 1 A, B Ubiquitin 9606
65 5GOJ 1 A Ubiquitin 9606
66 5GOJ 2 B D-ubiquitin 9606
67 1UBI 1 A UBIQUITIN 9606
68 2D3G 1 A, B ubiquitin 9913
69 5GOC 1 A Ubiquitin 9606
70 5GOC 2 D D-ubiquitin 9606
71 5X3N 1 A Polyubiquitin-B UNP residues 1-76 9606
72 5XIU 2 B Ubiquitin-40S ribosomal protein S27a 10090
73 5TXK 2 B Polyubiquitin-B 9606
74 5WFI 2 C, D Ubiquitin 9606
75 1UBQ 1 A UBIQUITIN 9606
76 6B7O 2 B, C Polyubiquitin-C 9606
77 4ZFR 2 B ubiquitin unp residues 77-152 9606
78 4MSM 2 B, D Ubiquitin UNP residues 77-152 9606
79 6GLC 2 B Polyubiquitin-B 9606
80 3N32 1 A Ubiquitin 9606
81 5L8H 2 B Polyubiquitin-B Recombinant expression followed by chemical synthesis. 9606
82 3ONS 1 A Ubiquitin 9606
83 5XU8 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
84 3MHS 4 D Ubiquitin 9606
85 5M93 1 A, B, C Polyubiquitin-B 9606
86 4K7W 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
87 2HD5 2 B Polyubiquitin residues 1-76 9913
88 5NMC 1 A, B, C Polyubiquitin-C 9606
89 5GOI 1 A, B Ubiquitin 9606
90 5GOI 2 C, D D-ubiquitin 9606
91 1WRD 2 B Ubiquitin 9913
92 5GVI 2 B ubiquitin 10090
93 5GVI 3 C ubiquitin 10090
94 4K7S 1 A, B, C ubiquitin UNP residues 1-73 9606 6.3.2.19 | Details
95 2FCS 1 A, B Ubiquitin residues 1-76
96 4Q5E 2 B Polyubiquitin 4932 6.3.2.19 | Details
97 5V1Z 2 C, D Ubiquitin 9606
98 3ALB 1 A, B, C, D ubiquitin 9606
99 6GZS 2 B Polyubiquitin-B 9606
100 5D0M 3 B Polyubiquitin-B UNP residues 1-76 9606
101 5XIS 2 B, E Ubiquitin-40S ribosomal protein S27a 10090
102 5XIS 3 C, F Ubiquitin-40S ribosomal protein S27a 10090
103 4PIG 1 A, B, C, D Ubiquitin 9606
104 5X3M 1 A Polyubiquitin-B 9606
105 5X3M 2 D D-ubiquitin D-Ub-S65E-NH2 9606
106 5NL5 1 A, B, C Polyubiquitin-B 9606
107 4MSQ 2 B, D Ubiquitin UNP residues 77-152 9606
108 4LDT 2 B Ubiquitin aldehyde 9606
109 4LDT 4 D Ubiquitin 9606
110 3VUW 1 A, B, C Polyubiquitin-C Ubiquitin 9606
111 3TMP 2 B, D, F, H Polyubiquitin-C Ubiquitin-like 1 9606
112 2QHO 1 A, C, E, G Ubiquitin 9913
113 3H7P 1 A Ubiquitin 9606
114 3H7P 2 B Ubiquitin 9606
115 4WZP 1 A, B, C, D, E, F, G, H ubiquitin phosphorylation at Ser65 UNP residues 1-76 9606
116 3EHV 1 A, B, C Ubiquitin 9606 6.3.2.19 | Details
117 5GO7 1 A Ubiquitin 9606
118 5GO7 2 B D-ubiquitin 9606
119 1P3Q 2 U, V Ubiquitin 9913
120 2OOB 2 B Ubiquitin 9913
121 5ULF 2 B, D Ubiquitin 9606
122 5KYE 2 C, D Polyubiquitin-B UNP residues 1-76 9606
123 5ULH 2 B Ubiquitin 9606
124 3HM3 1 A, B, C, D Ubiquitin 9606
125 5LRW 2 B, D Polyubiquitin-B Gly76 was replaced with 2-bromoethylamine 9606
126 5GOK 1 A Ubiquitin 9606
127 5GOK 2 B D-ubiquitin 9606
128 4WLR 3 C Polyubiquitin-B 9606
129 3WWQ 1 A, D, G, J Ubiquitin 10090
130 3WWQ 2 B, E, H, K Ubiquitin 10090
131 3EFU 1 A Ubiquitin 9606
132 4Q5H 2 B Polyubiquitin 4932 6.3.2.19 | Details
133 5AF4 1 A, B, C, D, E, F, G, H UBIQUITIN ISOPEPTIDE LINKAGES BETWEEN A76 C AND B33 NZ, C76 C AND D33 NZ, E76 C AND F33 NZ 9606
134 4V3K 2 B, E POLYUBIQUITIN-C LYS85 IN CHAINS A AND D IS COVALENTLY LINKED TO GLY76 IN CHAINS B AND E, RESPECTIVELY. RESIDUES 77-152 9606
135 4IG7 2 B Ubiquitin 9606
136 2JF5 1 A, B UBIQUITIN ISO-PEPTIDE LINK BETWEEN A-LYS63 AND B-GLY76 9606
137 5MN9 1 A, B Ubiquitin-40S ribosomal protein S27a 9913
138 5WVO 1 A, B Ubiquitin 9606
139 1UZX 2 B UBIQUITIN 9913
140 5YDR 1 A, D Polyubiquitin-B UNP residues 1-73 9606
141 1S1Q 2 B, D ubiquitin 9606
142 4LJP 2 B Polyubiquitin-C unp residues 77-152 9913
143 3VUY 1 A, B, C Polyubiquitin-C Ubiquitin 9606
144 3PHW 2 B, D, F, H Ubiquitin-40S ribosomal protein S27a UNP residues 1-75 9606
145 4PQT 2 B Protein UBBP4 unp residues 77-152 9606
146 5BZ0 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin from bovine erythrocytes 9913
147 2GBR 1 A, B, C Ubiquitin 9606
148 4XKL 1 A, C Ubiquitin 9606
149 4FJV 2 B, D Polyubiquitin-C 9606
150 5DFL 1 B Ubiquitin 9606
151 2C7N 2 B, D, F, H, J, L UBIQUITIN 9913
152 5GOH 1 A Ubiquitin 9606
153 5GOH 2 D D-ubiquitin 9606
154 3ZNI 4 D, H, L, P POLYUBIQUITIN-C CARBONYL CARBON OF G76 IN CHIANS D, H, L AND P FORMS AN ISOPEPTIDE LINKAGE WITH THE SIDECHAIN OF K85 IN CHAINS C, G, K AND O, RESPECTIVELY. GSGGS LINKER AT THE N- TERMINUS OF PROTEIN RESULTED FROM CLONING RESIDUES 77-152 9606
155 2G45 2 B, E Ubiquitin 9606
156 6AQR 4 D Polyubiquitin-C 9606
157 5MNJ 2 B, F Polyubiquitin-B gsggs linker at the N-terminus resulted from cloning. G76 in chain B is covalently linked to K85 side chain in Chain A. 9606
158 5ZQ3 2 C, D Ubiquitin 9606
159 5ZQ4 2 C, D ubiquitin 9606
160 4RF1 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
161 5JBY 1 A, C, E ubiquitin 9606
162 5JBY 2 B, D, F D-ubiquitin 9606
163 5IFR 2 B Polyubiquitin-B 9606
164 2IBI 2 B Ubiquitin 9606
165 5L6H 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
166 5GOG 1 A Ubiquitin 9606
167 5GOG 2 B D-ubiquitin 9606
168 4AUQ 3 C, F POLYUBIQUITIN-C UBIQUITIN, RESIDUES 1-76 9606
169 4NNJ 2 B, D, E Uba1 UNP residues 1-76 4932
170 4Z9S 1 A, B, C, D Ubiquitin-40S ribosomal protein S27a UNP RESIDUES 1-76 9913
171 2XEW 1 A, B, C, D, E, F, G, H, I, J, K, L UBIQUITIN UBIQUITIN POLYMER LINKED THROUGH LYS11 IN AN ISOPEPTIDE LINKAGE 9606
172 2WDT 2 B, D UBIQUITIN C-TERMINAL GLY76 OF WILDTYPE UBIQUITIN IS REPLACED BY A VINYL METHYLESTER MOIETY (UBVME) RESIDUES 1-75 9606
173 1AAR 1 A, B DI-UBIQUITIN 9913
174 4AP4 3 C, F UBIQUITIN C ISOPEPTIDE AMIDE LINKED TO UBCH5A (CHAIN B AND CHAIN E) RESIDUES 76-152 9606
175 4UEL 2 B POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH-L5 9606
176 4ZFT 2 B, D Polyubiquitin-B unp residues 77-152 9606
177 2WX0 1 A, B, E, F UBIQUITIN 9913
178 3A1Q 1 A, D Ubiquitin 10090
179 3A1Q 2 B, E Ubiquitin 10090
180 5HPL 2 C, D Ubiquitin variant R5.4 9606
181 5TR4 2 B, D Ubiquitin 9913
182 4BOS 2 C, E POLYUBIQUITIN-C RESIDUES 1-76 9606
183 3H7S 1 A, B Ubiquitin 9606
184 3C0R 2 B, D Ubiquitin 9606
185 5AIU 3 C, F POLYUBIQUITIN-C CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F UNP RESIDUES 1-76 9606
186 4S22 1 A, B, C, D Ubiquitin residues 77-152 9913
187 2C7M 2 B UBIQUITIN 9913
188 1TBE 1 A, B TETRAUBIQUITIN 9606
189 3PT2 2 B Ubiquitin B 9606
190 5VZW 2 C, D Ubiquitin 9606
191 3PRM 2 B, D Ubiquitin 9606 3.4.19.12 | Details
192 4R62 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin 9606
193 5EYA 3 C, D Polyubiquitin-B UNP residues 1-76 9606
194 5GO8 1 A ubiquitin 9606
195 5GO8 2 B D-ubiquitin 9606
196 3A33 2 B Ubiquitin 9606
197 3VHT 3 C Ubiquitin 10090
198 5XIT 1 D, F Ubiquitin-40S ribosomal protein S27a 10090
199 5XIT 3 B, H Ubiquitin-40S ribosomal protein S27a 10090
200 6ASR 1 A, C Ubiquitin residues 1-76 9606
201 2FCN 1 A, B Ubiquitin residues 1-76
202 4DHJ 2 B, F, J, M Ubiquitin aldehyde 9606
203 4DHJ 3 D, H Ubiquitin 9606
204 3ZNH 2 B POLYUBIQUITIN-B GLY76 IS REPLACED WITH A PROPARGYL GROUP 9606
205 4BBN 2 C POLYUBIQUITIN-B RESIDUES 1-76 9913
206 4BBN 3 F POLYUBIQUITIN-B RESIDUES 229-304 9913
207 4NQL 2 B Ubiquitin 10090
208 4NQL 3 C Ubiquitin 10090
209 1NBF 2 C, D Ubiquitin aldehyde 9606
210 2O6V 1 A, C, E, G Ubiquitin 9606
211 2O6V 2 B, F Ubiquitin 9606
212 2O6V 3 D, H Ubiquitin 9606
213 3OFI 2 C, D Ubiquitin 9606
214 3AUL 1 A, B Polyubiquitin-C Ubiquitin 9606
215 3UGB 2 B Polyubiquitin-C unp residues 1-76 9606
216 5JBV 1 A Ubiquitin 9606
217 5JBV 2 B D-ubiquitin 9606
218 5X3O 1 A Polyubiquitin-B UNP residues 1-76 9606
219 5X3O 2 D D-ubiquitin 9606
220 5ULK 2 B Ubiquitin 9606
221 5ZQ5 2 B, D Ubiquitin 9606
222 6FX4 2 B, D Polyubiquitin-B 35525
223 3NOB 1 A, B, C, D, E, F, G, H Ubiquitin 9606
224 3IFW 2 B Ubiquitin 9606
225 2FCM 1 A, B Ubiquitin residues 1-76
226 4KSK 2 C, D Polyubiquitin-C unp residues 76-152 9606
227 5L6J 2 B, D Ubiquitin-40S ribosomal protein S31 4932
228 5OHL 2 I, J, K, L, M, N, O, P Polyubiquitin-B 9606
229 3I3T 2 B, D, F, H Ubiquitin 9606
230 5FER 3 C, F Ubiquitin-40S ribosomal protein S27a 9913
231 5OHK 2 B Polyubiquitin-B 9606
232 1CMX 2 B, D PROTEIN (UBIQUITIN YUH1-UBAL) UBIQUITIN C-TERMINUS MODIFIED TO AN ALDEHYDE ALL 9606 3.1.2.15 | Details
233 3OJ3 1 A, B, C, D, E, F, G, H Ubiquitin Ubiquitin, UNP residues 1-76 9606
234 5N38 2 B Polyubiquitin-B Ser65 is phosphorylated 9606
235 3O65 2 B, D, F, H Ubiquitin 9606
236 5CRA 2 C, D Polyubiquitin-B UNP residues 1-75 9606
237 5U4P 3 C Ubiquitin-40S ribosomal protein S31 4932
238 5L6I 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
239 5XPK 1 A Ubiquitin 9606
240 5XPK 2 B D-ubiquitin 9606
241 5XDP 1 B D-ubiquitin 9606
242 5XDP 2 A ubiquitin-B K11/48-branched teraubiquitin 9606
243 5D0K 3 B, E, H, K Polyubiquitin-B UNP residues 1-76 9606
244 5OHV 1 A, C Ubiquitin 9606
245 5TUT 2 B Ubiquitin 9606
246 3OLM 2 D Ubiquitin 4932
247 3CMM 2 B, D Ubiquitin 559292
248 4MDK 2 E, F, G, H Ubiquitin UNP residues 76-152 9606
249 5N2W 2 B Polyubiquitin-B Ser65 is phosphorylated to give SEP65 9606
250 4MM3 1 A Ubiquitin UNP residues 1-76 9606
251 2FIF 1 A, C, E Ubiquitin 9913
252 5JQS 2 D Ubiquitin-40S ribosomal protein S27a 9913
253 5YDK 2 B, E, H, K Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
254 5YDK 3 C, D, I, J Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
255 2XBB 2 C, D UBIQUITIN 9913
256 2GMI 3 C Ubiquitin 9606
257 3DVG 3 X Ubiquitin D77 9606
258 3DVG 4 Y Ubiquitin 9606
259 1WR6 2 E, F, G, H ubiquitin 9913
260 3LDZ 1 E, F, G Ubiquitin 9913
261 3PTF 2 C, D Polyubiquitin-B Ubiquitin 9606
262 5ZQ7 2 B, D Ubiquitin 9606
263 3RUL 1 A, B, C, D Ubiquitin 9606
264 5BNB 2 E, F, G, I Polyubiquitin-B 9606
265 5LRX 2 B, D Polyubiquitin-B Gly76 was replaced with propargylamide 9606
266 5CAW 2 B, D Polyubiquitin-B phosphorylated at Ser65 Gly76 exchanged with chemical probe, bromopropylamine. The bromide was lost during the coupling. 9606
267 4XOK 1 A, B, C Ubiquitin 9606
268 3MTN 2 B, D UBIQUITIN VARIANT UBV.21.4 9606
269 5ZQ6 2 B, D Ubiquitin 9606
270 5LRV 2 B Polyubiquitin-B Lys11 was replaced with a diaminobutyric acid (DAB) residue 9606
271 5LRV 3 C Polyubiquitin-B Gly76 was replaced with a ligation handle for diubiquitin probe generation 9606
272 3DVN 3 U, X Ubiquitin D77 9606
273 3DVN 4 V, Y Ubiquitin 9606
274 5L8W 3 C Polyubiquitin-B Recombinant expression followed by chemical synthesis 9606
275 1F9J 1 A, B TETRAUBIQUITIN 9606
276 2FID 1 A Ubiquitin 9913
277 5OHP 2 B, C Polyubiquitin-B 9606
278 4HXD 1 A, C Polyubiquitin-C 9606 3.4.19.12 | Details
279 1YD8 1 U, V UBIQUIN 9913
280 4BOZ 2 B, C, E UBIQUITIN-C 9606
281 3WXG 2 B, E Ubiquitin 10090
282 3WXG 3 C, F Ubiquitin UNP residues 1-72 10090
283 6CP2 3 C Polyubiquitin-B 9606
284 4XKH 1 A, B, D, F, G, I Polyubiquitin-C UNP RESIDUES 77-152 9913
285 3IHP 2 C, D Ubiquitin 9606
286 5LN1 2 U Polyubiquitin-B 9606
287 3K9P 2 B Ubiquitin 9606
288 4BVU 3 C UBIQUITIN OXYESTER LINK BETWEEN G76 AND UBCH5C S85 9606
289 3JSV 1 A Ubiquitin 9606
290 3JSV 2 B Ubiquitin 9606
291 3TBL 2 D, E Ubiquitin 9606
292 2HTH 1 A Ubiquitin 9606
293 3KW5 2 B Ubiquitin 9606
294 6EQI 1 A Ubiquitin 9606
295 5E6J 2 B, E ubiquitin 32630
296 5E6J 3 C, F Polyubiquitin-B 32630
297 2XK5 1 A UBIQUITIN 9606
298 2XK5 2 B UBIQUITIN 9606
299 4JQW 2 C Polyubiquitin-C Ubiquitin 9606
300 4RF0 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
301 3KVF 2 B Ubiquitin 9606
302 6FYH 2 B Ubiquitin 35525
303 5AF6 1 A, B, C, D, E UBIQUITIN ISOPEPTIDE BONDS ACROSS BETWEEN CHAINS, A76 C AND D33 NZ, B76 C AND A33 NZ, C76C AND B33 NZ, E76 C AND C33 NZ. ISOPEPTIDE BOND ACROSS THE ASU FOR, D76 C AND E33 NZ SYMM 9606
304 3H1U 1 A, B Ubiquitin 9913
305 5JTJ 2 B Polyubiquitin-B 9606
306 2WX1 1 A, B UBIQUITIN 9913
307 4WUR 2 B Polyubiquitin-B UNP residues 1-76 9606
308 4S1Z 1 A, B, C, D, E Ubiquitin residues 1-76 9606
309 6DC6 2 B, D Ubiquitin 9606
310 4XOL 1 A, B Ubiquitin 9606
311 5JP3 2 B, D, F, H Polyubiquitin-B 9606
312 4P4H 3 S, T, U, W, X Ubiquitin-60S ribosomal protein L40 9606
313 5O44 1 A, E Ubiquitin 7370
314 5O44 2 B, C Polyubiquitin-B 9606
315 5O44 3 D, F Polyubiquitin-B 9606
316 3PHD 2 E, F, G, H Polyubiquitin 9606
317 5YIK 2 C, D, F ubiquitin UNP RESIDUES 1-76 9606
318 3N30 1 A, B Ubiquitin 9606
319 3ZLZ 1 A, B UBIQUITIN TRI-UBIQUITIN CHAIN LINKED VIA LYS6. K48R IN BOTH MOLECULES. ISOPEPTIDE LINKAGES ARE NOT RESOLVED. 9606
320 3JVZ 3 X, Y Ubiquitin 9606
321 4DHZ 2 B Ubiquitin aldehyde 9606
322 4DHZ 3 E Ubiquitin 9606
323 5YIJ 2 C, D, G Ubiquitin UNP RESIDUES 1-76 9606
324 5UDH 3 E Ubiquitin C variant Hexa-his N-terminal tagged protein UNP residues 17-92 9606
325 5AIT 3 C, F POLYUBIQUITIN-C UNP RESIDUES 1-76 9913
326 3VFK 1 A ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala 9606
327 3JW0 3 X, Y Ubiquitin 9606
328 4LCD 3 E, F Ubiquitin UNP residues 1-75 9606
329 4DDG 2 D, E, F, G, H, I, M, N, O, P, Q, R Polyubiquitin-C 9606
330 5JTV 2 B, D, F, H Polyubiquitin-B 9606
331 5OHN 2 B, D Polyubiquitin-B 9606
332 2FCQ 1 A, B Ubiquitin residues 1-76 9031
333 3EEC 1 A, B Ubiquitin 9606
334 5VNZ 3 C, F Ubiquitin 9606
335 4NQK 2 E, F, G, H, I, J Ubiquitin UNP residues 76-152 9606
336 4DDI 2 D, E, F, G, H, I Polyubiquitin-C 9606
337 5H7S 1 E, F Ubiquitin-like 1 9606
338 5EDV 3 E, F, G, H Polyubiquitin-B UNP residues 1-76 9606
339 4UF6 2 B, E, H, K POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH- L5 9606
340 5OHM 1 A, C, E, G, I, K Polyubiquitin-C 9598
341 4ZUX 10 X, c, h, m Polyubiquitin-B 9606
342 2DX5 2 B Ubiquitin 9913
343 3OJ4 2 B, E Ubiquitin Ubiquitin, UNP residues 1-76 9606
344 5VO0 3 C, F Ubiquitin 9606
345 6DJW 2 B Ubiquitin 9913
346 2AYO 2 B Ubiquitin 9606
347 5KHY 1 A Polyubiquitin-B 9606
348 5KHY 2 B Polyubiquitin-B 9606
349 6DJX 2 B Ubiquitin 9913
350 4JIO 2 U Ubiquitin 9606
351 4WHV 3 A, F, G, L Polyubiquitin-B unp residues 1-76 9606
352 6FTX 8 N, O Polyubiquitin-B 9606
353 5VZM 1 A Ubiquitin UNP residues 1-76 9606
354 5XK4 1 A Polyubiquitin-B UNP residues 1-76 9606
355 5XK5 1 A Polyubiquitin-B UNP residues 1-76 9606
356 5VEY 2 B Polyubiquitin-B 9606
357 5VF0 1 A Polyubiquitin-B 9606
358 5XBO 1 A Polyubiquitin-B UNP residues 1-76 9606
359 5UJL 1 A, B Ubiquitin residues 1-76 9606
360 5UJN 1 A, B Ubiquitin 9606
361 5GJQ 34 y Polyubiquitin-B UNP RESIDUES 1-76 9606
362 5KGF 8 M, O Ubiquitin 9606
363 2NBD 1 A entity 9606
364 2NBE 1 A entity 9606
365 5A5B 9 9 UBIQUITIN ALDEHYDE 9606
366 2N3U 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
367 2N3V 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
368 2N3W 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
369 2N2K 1 A ubiquitin 9606
370 2N2K 2 B ubiquitin 9606
371 2N13 2 B Ubiquitin 9606
372 2N13 3 C Ubiquitin 9606
373 2MWS 1 A Ubiquitin UNP residues 1-76 9606
374 2MUR 2 B Ubiquitin 9606
375 2MSG 1 A Ubiquitin UNP residuse 1-72 9606
376 2MRO 1 A Polyubiquitin-B Human Ubiquitin 9606
377 2MRE 1 A Polyubiquitin-C unp residues 1-76 9606
378 2MOR 1 A Ubiquitin UNP residues 1-76 9606
379 2MJB 1 A Ubiquitin-60S ribosomal protein L40 Ubiquitin-like 3 domain 9606
380 2MJ5 1 A Polyubiquitin-C UNP residuses 1-76 9606
381 2MI8 1 A Ubiquitin 9606
382 2RU6 1 A Ubiquitin 9606
383 2MCN 2 B Ubiquitin UNP residues 1-76 9606
384 2MBQ 1 A, B Ubiquitin UNP residues 1-76 9606
385 2MBO 1 A, B Ubiquitin UNP residues 1-76 9606
386 2MBH 2 A Ubiquitin 9606
387 2MBB 2 B Polyubiquitin-B UNP P0CG47 residues 1-76 9606
388 2LZ6 1 A Ubiquitin 9606
389 2LVO 1 A Ubiquitin 9606
390 2LVP 1 A, B Ubiquitin 9606
391 2LVQ 1 A, B Ubiquitin 9606
392 2RSU 1 A Ubiquitin 9606
393 2LJ5 1 A Ubiquitin 9606
394 2LD9 1 A Ubiquitin 9606
395 2L3Z 1 A Ubiquitin UNP Residues 1-76 9606
396 2L0T 1 A Ubiquitin 9606
397 2L0F 1 A Ubiquitin 9606
398 2L00 2 B Ubiquitin ubiquitin core domain 4932
399 2RR9 1 A, B ubiquitin 9606
400 2KWV 2 B Ubiquitin 9606
401 2KWU 2 B Ubiquitin 9606
402 2KTF 1 A Ubiquitin 9606
403 2KOX 1 A Ubiquitin 9606
404 2KN5 1 A Ubiquitin 9606
405 2KLG 1 A Ubiquitin 9606
406 2KJH 2 B Ubiquitin 9606
407 2KHW 2 B Ubiquitin 9606
408 2KDE 2 B, C Ubiquitin 8355
409 2KDF 2 B, C Ubiquitin 9606
410 2K8B 1 A Ubiquitin 9606
411 2K8C 1 A Ubiquitin 9606
412 2K6D 2 B Ubiquitin ubiquitin 9606
413 2K39 1 A Ubiquitin 8355
414 2JZZ 1 A Ubiquitin 9606
415 2JY6 1 A Ubiquitin protein 9606
416 2JWZ 1 A Ubiquitin 4932
417 2JT4 2 B Ubiquitin SH3 domain sequence database residues 350-420 4932
418 2Z59 2 B Ubiquitin 9606
419 2JRI 2 B, C UBC protein sequence database residues 318-469 9606
420 2PE9 1 A, B Ubiquitin 9606
421 2PEA 1 A, B Ubiquitin 9606
422 2NR2 1 A Ubiquitin 9606
423 2G3Q 2 B Ubiquitin 4932
424 2DEN 2 B Ubiquitin 9606
425 2FUH 2 B Ubiquitin Ubiquitin 10116
426 1ZGU 2 B Ubiquitin 9606
427 2BGF 1 A, B DI-UBIQUITIN ISOPEPTIDE BOND BETWEEN GLY76A AND LYS48B 9606
428 1XQQ 1 A ubiquitin 9606
429 1WR1 1 A Ubiquitin 4932
430 1V80 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
431 1V81 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
432 1Q5W 2 B Ubiquitin 9606
433 1Q0W 2 B Ubiquitin 4932
434 1OTR 2 B Ubiquitin 4932
435 1G6J 1 A UBIQUITIN 9606
436 1FXT 2 B UBIQUITIN 9606
437 1D3Z 1 A PROTEIN (UBIQUITIN) 9606
438 1C3T 1 A PROTEIN (1D8 UBIQUITIN) 9606
439 1UD7 1 A PROTEIN (UBIQUITIN CORE MUTANT 1D7) 9606