Sequence Similarity Clusters for the Entities in PDB 3VHT

Entity #1 | Chains: A
Green fluorescent protein protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50551
95 % 229 255 70 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 244 297 38
70 % 247 301 33
50 % 248 303 79
40 % 258 316 96
30 % 440 531 15
Entity #2 | Chains: B
Green fluorescent protein,ATPase WRNIP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50552
95 % 1 1 41793
90 % 3 4 13525
70 % 3 4 12681
50 % 3 4 11280
40 % 3 4 10133
30 % 3 4 8639
Entity #3 | Chains: C
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 412 4
95 % 195 436 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 204 449 6
70 % 217 485 8
50 % 223 506 10
40 % 229 526 15
30 % 270 675 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5TOG 1 A Polyubiquitin-B 9606
2 5NVG 1 A Polyubiquitin-B 9606
3 5TOF 1 A Polyubiquitin-B 9606
4 4XOF 1 A Ubiquitin 9606
5 3A9J 1 A Ubiquitin 10090
6 3A9J 2 B Ubiquitin 10090
7 5GOB 1 A Ubiquitin 9606
8 5GOB 2 B D-ubiquitin 9606
9 5W46 1 A, B Polyubiquitin-B 9606
10 5GOD 1 A, B Ubiquitin 9606
11 5GOD 2 C, D D-ubiquitin 9606
12 5XVE 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
13 3NHE 2 B Ubiquitin 9606
14 5DK8 1 A, B Polyubiquitin-B Ubiquitin, UNP residues 2-75 9606
15 1YJ1 1 A, B, C Ubiquitin residues 1-76
16 5NL4 1 A, B, C Polyubiquitin-C 9606
17 5V1Y 2 C, D Ubiquitin 9606
18 4M0W 2 B Ubiquitin 9913
19 4Y1H 1 A Ubiquitin-40S ribosomal protein S27a K33 linked tri-Ubiquitin. 9913
20 2GBJ 1 A, B Ubiquitin 9606
21 1YIW 1 A, B, C Ubiquitin 9031
22 1OGW 1 A UBIQUITIN LEF IS (4S)-5-FLUORO-L-LEUCINE RESIDUES 1-76 9606
23 2WWZ 1 A, B UBIQUITIN 9913
24 5KYC 2 C Polyubiquitin-B UNP residues 1-76 9606
25 4IUM 2 B Ubiquitin UNP residues 1-75 9606
26 4GU2 1 A Ubiquitin 5759
27 3A9K 1 A Ubiquitin 10090
28 3A9K 2 B Ubiquitin 10090
29 4HK2 1 A, B, C, D Ubiquitin 9606
30 5KYF 2 C Polyubiquitin-B UNP residues 1-76 9606
31 1XD3 2 B, D UBC protein 9606
32 5NLF 1 A, B, C Polyubiquitin-C 9606
33 5V5H 2 B Ubiquitin variant CC.2 32630
34 4ZPZ 1 A, B Polyubiquitin-B ubiquitin, UNP residues 1-73 9606
35 4UN2 1 A UBIQUITIN 9606
36 5VBT 1 A, B UBH04 32630
37 4PIH 1 A, B Ubiquitin 9606
38 2ZCC 1 A, B, C Ubiquitin 9913
39 4PIJ 1 A, B Ubiquitin 9606
40 5NLI 1 A, B, C Polyubiquitin-C 9606
41 5O6T 2 C, D Polyubiquitin-B A variant of ubiquitin identified from a phage-display library 9606
42 5YT6 1 A, C, E, G Ubiquitin 9606
43 4V3L 2 B, D POLYUBIQUITIN-C G76 IN CHAIN B IS COVALENTLY LINKED TO K85 SIDE CHAIN IN CHAIN A. RESIDUES 77-152 9606
44 4LJO 2 B Polyubiquitin-C unp residues 77-152 9913
45 3BY4 2 B Ubiquitin 9606
46 6FDK 2 B Polyubiquitin-B 9606
47 5K9P 1 A Polyubiquitin-B 9606
48 5NLJ 1 A, B, C Polyubiquitin-B 9606
49 5KYD 1 D Polyubiquitin-B UNP residues 1-76 9606
50 4XYZ 1 A, B Polyubiquitin-C UNP residues 77-152 9913
51 3M3J 1 A, B, C, D, E, F Ubiquitin 9913
52 2ZNV 2 B, E Ubiquitin 10090
53 2ZNV 3 C, F Ubiquitin 10090
54 2GBM 1 A, B, C, D Ubiquitin 9606
55 5OXH 1 A Ubiquitin T66V/L67N mutant 9606
56 5EMZ 1 A, C, E Polyubiquitin-B 9606
57 5EMZ 2 B, D, F Polyubiquitin-B 9606
58 6B7M 2 B, C Polyubiquitin-C 9606
59 3VUX 1 A, B, C Polyubiquitin-C Ubiquitin 9606
60 2GBN 1 A Ubiquitin 9606
61 2ZCB 1 A, B, C Ubiquitin 9606
62 5OXI 1 A, B Ubiquitin L67S mutant 9606
63 4K1R 2 B, D Polyubiquitin-C 9606
64 3PRP 2 B, D Ubiquitin 9606 3.4.19.12 | Details
65 4I6N 2 B, D Ubiquitin 9606
66 3V6C 2 B Ubiquitin 9606
67 5AF5 1 A POLYUBIQUITIN-C 9606
68 5J8P 1 A ubiquitin 9606
69 5J8P 2 B D-ubiquitin 9606
70 4K7U 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
71 6EI1 2 B Polyubiquitin-B 9606
72 6FGE 2 C Polyubiquitin-B 9606
73 2J7Q 2 B, D UBIQUITIN THE C-TERMINAL GLY 76 IS REPLACED BY THE VINYLMETHYLESTER MOIETY UBIQUITIN FUSED TO VINYLMETHYLESTER, UBVME, RESIDUES 1-75 9606
74 3NS8 1 A, B Ubiquitin 9606
75 5GOJ 1 A Ubiquitin 9606
76 5GOJ 2 B D-ubiquitin 9606
77 1UBI 1 A UBIQUITIN 9606
78 2D3G 1 A, B ubiquitin 9913
79 5GOC 1 A Ubiquitin 9606
80 5GOC 2 D D-ubiquitin 9606
81 5X3N 1 A Polyubiquitin-B UNP residues 1-76 9606
82 5XIU 2 B Ubiquitin-40S ribosomal protein S27a 10090
83 5TXK 2 B Polyubiquitin-B 9606
84 5WFI 2 C, D Ubiquitin 9606
85 1UBQ 1 A UBIQUITIN 9606
86 6B7O 2 B, C Polyubiquitin-C 9606
87 4ZFR 2 B ubiquitin unp residues 77-152 9606
88 4MSM 2 B, D Ubiquitin UNP residues 77-152 9606
89 4HJK 1 A Ubiquitin UNP residues 87-162 9606
90 6GLC 2 B Polyubiquitin-B 9606
91 3N32 1 A Ubiquitin 9606
92 5L8H 2 B Polyubiquitin-B Recombinant expression followed by chemical synthesis. 9606
93 3ONS 1 A Ubiquitin 9606
94 5XU8 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
95 3MHS 4 D Ubiquitin 9606
96 5M93 1 A, B, C Polyubiquitin-B 9606
97 4K7W 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
98 2HD5 2 B Polyubiquitin residues 1-76 9913
99 5NMC 1 A, B, C Polyubiquitin-C 9606
100 5GOI 1 A, B Ubiquitin 9606
101 5GOI 2 C, D D-ubiquitin 9606
102 1WRD 2 B Ubiquitin 9913
103 5GVI 2 B ubiquitin 10090
104 5GVI 3 C ubiquitin 10090
105 4K7S 1 A, B, C ubiquitin UNP residues 1-73 9606 6.3.2.19 | Details
106 5CVM 2 B Polyubiquitin-B UNP residues 1-76 9606
107 2FCS 1 A, B Ubiquitin residues 1-76
108 4Q5E 2 B Polyubiquitin 4932 6.3.2.19 | Details
109 5V1Z 2 C, D Ubiquitin 9606
110 3ALB 1 A, B, C, D ubiquitin 9606
111 5D0M 3 B Polyubiquitin-B UNP residues 1-76 9606
112 5XIS 2 B, E Ubiquitin-40S ribosomal protein S27a 10090
113 5XIS 3 C, F Ubiquitin-40S ribosomal protein S27a 10090
114 4PIG 1 A, B, C, D Ubiquitin 9606
115 5X3M 1 A Polyubiquitin-B 9606
116 5X3M 2 D D-ubiquitin D-Ub-S65E-NH2 9606
117 5NL5 1 A, B, C Polyubiquitin-B 9606
118 4MSQ 2 B, D Ubiquitin UNP residues 77-152 9606
119 4LDT 2 B Ubiquitin aldehyde 9606
120 4LDT 4 D Ubiquitin 9606
121 3VUW 1 A, B, C Polyubiquitin-C Ubiquitin 9606
122 3TMP 2 B, D, F, H Polyubiquitin-C Ubiquitin-like 1 9606
123 2QHO 1 A, C, E, G Ubiquitin 9913
124 3H7P 1 A Ubiquitin 9606
125 3H7P 2 B Ubiquitin 9606
126 4WZP 1 A, B, C, D, E, F, G, H ubiquitin phosphorylation at Ser65 UNP residues 1-76 9606
127 3EHV 1 A, B, C Ubiquitin 9606 6.3.2.19 | Details
128 5GO7 1 A Ubiquitin 9606
129 5GO7 2 B D-ubiquitin 9606
130 1P3Q 2 U, V Ubiquitin 9913
131 2OOB 2 B Ubiquitin 9913
132 5ULF 2 B, D Ubiquitin 9606
133 5KYE 2 C, D Polyubiquitin-B UNP residues 1-76 9606
134 5ULH 2 B Ubiquitin 9606
135 3HM3 1 A, B, C, D Ubiquitin 9606
136 5LRW 2 B, D Polyubiquitin-B Gly76 was replaced with 2-bromoethylamine 9606
137 5GOK 1 A Ubiquitin 9606
138 5GOK 2 B D-ubiquitin 9606
139 4WLR 3 C Polyubiquitin-B 9606
140 3WWQ 1 A, D, G, J Ubiquitin 10090
141 3WWQ 2 B, E, H, K Ubiquitin 10090
142 5JG6 2 B, C Polyubiquitin-B 9606
143 3EFU 1 A Ubiquitin 9606
144 4Q5H 2 B Polyubiquitin 4932 6.3.2.19 | Details
145 5AF4 1 A, B, C, D, E, F, G, H UBIQUITIN ISOPEPTIDE LINKAGES BETWEEN A76 C AND B33 NZ, C76 C AND D33 NZ, E76 C AND F33 NZ 9606
146 4V3K 2 B, E POLYUBIQUITIN-C LYS85 IN CHAINS A AND D IS COVALENTLY LINKED TO GLY76 IN CHAINS B AND E, RESPECTIVELY. RESIDUES 77-152 9606
147 4IG7 2 B Ubiquitin 9606
148 2JF5 1 A, B UBIQUITIN ISO-PEPTIDE LINK BETWEEN A-LYS63 AND B-GLY76 9606
149 5MN9 1 A, B Ubiquitin-40S ribosomal protein S27a 9913
150 5WVO 1 A, B Ubiquitin 9606
151 3V6E 2 B Ubiquitin 9606
152 1UZX 2 B UBIQUITIN 9913
153 5YDR 1 A, D Polyubiquitin-B UNP residues 1-73 9606
154 5V5G 2 B, D Ubiquitin variant CC.4 32630
155 1S1Q 2 B, D ubiquitin 9606
156 4LJP 2 B Polyubiquitin-C unp residues 77-152 9913
157 3VUY 1 A, B, C Polyubiquitin-C Ubiquitin 9606
158 3PHW 2 B, D, F, H Ubiquitin-40S ribosomal protein S27a UNP residues 1-75 9606
159 4PQT 2 B Protein UBBP4 unp residues 77-152 9606
160 5BZ0 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin from bovine erythrocytes 9913
161 2GBR 1 A, B, C Ubiquitin 9606
162 4XKL 1 A, C Ubiquitin 9606
163 4FJV 2 B, D Polyubiquitin-C 9606
164 5DFL 1 B Ubiquitin 9606
165 2C7N 2 B, D, F, H, J, L UBIQUITIN 9913
166 5HPS 2 B Ubiquitin variant P1.1 9606
167 5GOH 1 A Ubiquitin 9606
168 5GOH 2 D D-ubiquitin 9606
169 3ZNI 4 D, H, L, P POLYUBIQUITIN-C CARBONYL CARBON OF G76 IN CHIANS D, H, L AND P FORMS AN ISOPEPTIDE LINKAGE WITH THE SIDECHAIN OF K85 IN CHAINS C, G, K AND O, RESPECTIVELY. GSGGS LINKER AT THE N- TERMINUS OF PROTEIN RESULTED FROM CLONING RESIDUES 77-152 9606
170 2G45 2 B, E Ubiquitin 9606
171 6AQR 4 D Polyubiquitin-C 9606
172 5MNJ 2 B, F Polyubiquitin-B gsggs linker at the N-terminus resulted from cloning. G76 in chain B is covalently linked to K85 side chain in Chain A. 9606
173 5ZQ3 2 C, D Ubiquitin 9606
174 5ZQ4 2 C, D ubiquitin 9606
175 4GSW 1 A, B Ubiquitin 5759
176 4RF1 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
177 1SIF 1 A ubiquitin 9606
178 5JBY 1 A, C, E ubiquitin 9606
179 5JBY 2 B, D, F D-ubiquitin 9606
180 5IFR 2 B Polyubiquitin-B 9606
181 2IBI 2 B Ubiquitin 9606
182 5L6H 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
183 5GOG 1 A Ubiquitin 9606
184 5GOG 2 B D-ubiquitin 9606
185 2GBK 1 A, B, C, D Ubiquitin 9606
186 4AUQ 3 C, F POLYUBIQUITIN-C UBIQUITIN, RESIDUES 1-76 9606
187 4NNJ 2 B, D, E Uba1 UNP residues 1-76 4932
188 4Z9S 1 A, B, C, D Ubiquitin-40S ribosomal protein S27a UNP RESIDUES 1-76 9913
189 2XEW 1 A, B, C, D, E, F, G, H, I, J, K, L UBIQUITIN UBIQUITIN POLYMER LINKED THROUGH LYS11 IN AN ISOPEPTIDE LINKAGE 9606
190 2WDT 2 B, D UBIQUITIN C-TERMINAL GLY76 OF WILDTYPE UBIQUITIN IS REPLACED BY A VINYL METHYLESTER MOIETY (UBVME) RESIDUES 1-75 9606
191 1AAR 1 A, B DI-UBIQUITIN 9913
192 4AP4 3 C, F UBIQUITIN C ISOPEPTIDE AMIDE LINKED TO UBCH5A (CHAIN B AND CHAIN E) RESIDUES 76-152 9606
193 4UEL 2 B POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH-L5 9606
194 4II2 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
195 4ZFT 2 B, D Polyubiquitin-B unp residues 77-152 9606
196 2WX0 1 A, B, E, F UBIQUITIN 9913
197 3A1Q 1 A, D Ubiquitin 10090
198 3A1Q 2 B, E Ubiquitin 10090
199 5HPL 2 C, D Ubiquitin variant R5.4 9606
200 5TR4 2 B, D Ubiquitin 9913
201 4BOS 2 C, E POLYUBIQUITIN-C RESIDUES 1-76 9606
202 3H7S 1 A, B Ubiquitin 9606
203 3C0R 2 B, D Ubiquitin 9606
204 5AIU 3 C, F POLYUBIQUITIN-C CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F UNP RESIDUES 1-76 9606
205 4S22 1 A, B, C, D Ubiquitin residues 77-152 9913
206 2C7M 2 B UBIQUITIN 9913
207 1TBE 1 A, B TETRAUBIQUITIN 9606
208 3PT2 2 B Ubiquitin B 9606
209 5VZW 2 C, D Ubiquitin 9606
210 5V5I 2 B, D Ubiquitin variant CC.1 32630
211 3PRM 2 B, D Ubiquitin 9606 3.4.19.12 | Details
212 4R62 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin 9606
213 5EYA 3 C, D Polyubiquitin-B UNP residues 1-76 9606
214 5GO8 1 A ubiquitin 9606
215 5GO8 2 B D-ubiquitin 9606
216 3A33 2 B Ubiquitin 9606
217 3VHT 3 C Ubiquitin 10090
218 5XIT 1 D, F Ubiquitin-40S ribosomal protein S27a 10090
219 5XIT 3 B, H Ubiquitin-40S ribosomal protein S27a 10090
220 6ASR 1 A, C Ubiquitin residues 1-76 9606
221 2FCN 1 A, B Ubiquitin residues 1-76
222 4DHJ 2 B, F, J, M Ubiquitin aldehyde 9606
223 4DHJ 3 D, H Ubiquitin 9606
224 3ZNH 2 B POLYUBIQUITIN-B GLY76 IS REPLACED WITH A PROPARGYL GROUP 9606
225 4BBN 2 C POLYUBIQUITIN-B RESIDUES 1-76 9913
226 4BBN 3 F POLYUBIQUITIN-B RESIDUES 229-304 9913
227 4NQL 2 B Ubiquitin 10090
228 4NQL 3 C Ubiquitin 10090
229 1NBF 2 C, D Ubiquitin aldehyde 9606
230 2O6V 1 A, C, E, G Ubiquitin 9606
231 2O6V 2 B, F Ubiquitin 9606
232 2O6V 3 D, H Ubiquitin 9606
233 3OFI 2 C, D Ubiquitin 9606
234 3AUL 1 A, B Polyubiquitin-C Ubiquitin 9606
235 3UGB 2 B Polyubiquitin-C unp residues 1-76 9606
236 5JBV 1 A Ubiquitin 9606
237 5JBV 2 B D-ubiquitin 9606
238 5X3O 1 A Polyubiquitin-B UNP residues 1-76 9606
239 5X3O 2 D D-ubiquitin 9606
240 5ULK 2 B Ubiquitin 9606
241 5ZQ5 2 B, D Ubiquitin 9606
242 6FX4 2 B, D Polyubiquitin-B 35525
243 3NOB 1 A, B, C, D, E, F, G, H Ubiquitin 9606
244 3IFW 2 B Ubiquitin 9606
245 3N3K 2 B Ubiquitin 9606
246 5UCL 1 A Polyubiquitin-B 9606
247 2FCM 1 A, B Ubiquitin residues 1-76
248 4KSK 2 C, D Polyubiquitin-C unp residues 76-152 9606
249 5L6J 2 B, D Ubiquitin-40S ribosomal protein S31 4932
250 5HPK 2 B Ubiquitin variant NL.1 9606
251 5OHL 2 I, J, K, L, M, N, O, P Polyubiquitin-B 9606
252 3I3T 2 B, D, F, H Ubiquitin 9606
253 5FER 3 C, F Ubiquitin-40S ribosomal protein S27a 9913
254 5IBK 3 C, F Polyubiquitin-B UNP residues 75-150 9606
255 5OHK 2 B Polyubiquitin-B 9606
256 1CMX 2 B, D PROTEIN (UBIQUITIN YUH1-UBAL) UBIQUITIN C-TERMINUS MODIFIED TO AN ALDEHYDE ALL 9606 3.1.2.15 | Details
257 3OJ3 1 A, B, C, D, E, F, G, H Ubiquitin Ubiquitin, UNP residues 1-76 9606
258 5N38 2 B Polyubiquitin-B Ser65 is phosphorylated 9606
259 3O65 2 B, D, F, H Ubiquitin 9606
260 5CRA 2 C, D Polyubiquitin-B UNP residues 1-75 9606
261 5V69 2 B ME.4 9606
262 5U4P 3 C Ubiquitin-40S ribosomal protein S31 4932
263 5L6I 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
264 5XPK 1 A Ubiquitin 9606
265 5XPK 2 B D-ubiquitin 9606
266 5XDP 1 B D-ubiquitin 9606
267 5XDP 2 A ubiquitin-B K11/48-branched teraubiquitin 9606
268 5O76 3 E, F UbV.pCBL ubiquitin variant 9606
269 5D0K 3 B, E, H, K Polyubiquitin-B UNP residues 1-76 9606
270 5OHV 1 A, C Ubiquitin 9606
271 5KNL 2 B, E Ubiquitin 84753
272 4I6L 2 B Ubiquitin UNP residues 77-150 9606
273 5TUT 2 B Ubiquitin 9606
274 3OLM 2 D Ubiquitin 4932
275 3CMM 2 B, D Ubiquitin 559292
276 4MDK 2 E, F, G, H Ubiquitin UNP residues 76-152 9606
277 5N2W 2 B Polyubiquitin-B Ser65 is phosphorylated to give SEP65 9606
278 4MM3 1 A Ubiquitin UNP residues 1-76 9606
279 2FIF 1 A, C, E Ubiquitin 9913
280 5JQS 2 D Ubiquitin-40S ribosomal protein S27a 9913
281 5YDK 2 B, E, H, K Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
282 5YDK 3 C, D, I, J Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
283 2XBB 2 C, D UBIQUITIN 9913
284 2GMI 3 C Ubiquitin 9606
285 4HCN 2 B Polyubiquitin unp RESIDUES 1-76 4932
286 5J26 1 B Ubiquitin Variant i53 9606
287 3DVG 3 X Ubiquitin D77 9606
288 3DVG 4 Y Ubiquitin 9606
289 1WR6 2 E, F, G, H ubiquitin 9913
290 3LDZ 1 E, F, G Ubiquitin 9913
291 3PTF 2 C, D Polyubiquitin-B Ubiquitin 9606
292 6BVA 3 A, B Polyubiquitin-B 9606
293 5ZQ7 2 B, D Ubiquitin 9606
294 3RUL 1 A, B, C, D Ubiquitin 9606
295 5BNB 2 E, F, G, I Polyubiquitin-B 9606
296 5LRX 2 B, D Polyubiquitin-B Gly76 was replaced with propargylamide 9606
297 5CAW 2 B, D Polyubiquitin-B phosphorylated at Ser65 Gly76 exchanged with chemical probe, bromopropylamine. The bromide was lost during the coupling. 9606
298 4XOK 1 A, B, C Ubiquitin 9606
299 3MTN 2 B, D UBIQUITIN VARIANT UBV.21.4 9606
300 5ZQ6 2 B, D Ubiquitin 9606
301 5V6A 2 B ME.2 9606
302 5LRV 2 B Polyubiquitin-B Lys11 was replaced with a diaminobutyric acid (DAB) residue 9606
303 5LRV 3 C Polyubiquitin-B Gly76 was replaced with a ligation handle for diubiquitin probe generation 9606
304 3DVN 3 U, X Ubiquitin D77 9606
305 3DVN 4 V, Y Ubiquitin 9606
306 5L8W 3 C Polyubiquitin-B Recombinant expression followed by chemical synthesis 9606
307 1F9J 1 A, B TETRAUBIQUITIN 9606
308 6BYH 3 C, D, H Polyubiquitin-B 9606
309 2FID 1 A Ubiquitin 9913
310 5OHP 2 B, C Polyubiquitin-B 9606
311 4HXD 1 A, C Polyubiquitin-C 9606 3.4.19.12 | Details
312 1YD8 1 U, V UBIQUIN 9913
313 4BOZ 2 B, C, E UBIQUITIN-C 9606
314 5HPT 2 B, E, H Ubiquitin variant P2.3 9606
315 3WXG 2 B, E Ubiquitin 10090
316 3WXG 3 C, F Ubiquitin UNP residues 1-72 10090
317 6CP2 3 C Polyubiquitin-B 9606
318 4XKH 1 A, B, D, F, G, I Polyubiquitin-C UNP RESIDUES 77-152 9913
319 3IHP 2 C, D Ubiquitin 9606
320 5LN1 2 U Polyubiquitin-B 9606
321 3K9P 2 B Ubiquitin 9606
322 4BVU 3 C UBIQUITIN OXYESTER LINK BETWEEN G76 AND UBCH5C S85 9606
323 5CVN 3 D Polyubiquitin-B UNP residues 1-76 9606
324 3JSV 1 A Ubiquitin 9606
325 3JSV 2 B Ubiquitin 9606
326 3TBL 2 D, E Ubiquitin 9606
327 2HTH 1 A Ubiquitin 9606
328 3KW5 2 B Ubiquitin 9606
329 6EQI 1 A Ubiquitin 9606
330 5E6J 2 B, E ubiquitin 32630
331 5E6J 3 C, F Polyubiquitin-B 32630
332 2XK5 1 A UBIQUITIN 9606
333 2XK5 2 B UBIQUITIN 9606
334 4JQW 2 C Polyubiquitin-C Ubiquitin 9606
335 4RF0 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
336 3KVF 2 B Ubiquitin 9606
337 6FYH 2 B Ubiquitin 35525
338 5AF6 1 A, B, C, D, E UBIQUITIN ISOPEPTIDE BONDS ACROSS BETWEEN CHAINS, A76 C AND D33 NZ, B76 C AND A33 NZ, C76C AND B33 NZ, E76 C AND C33 NZ. ISOPEPTIDE BOND ACROSS THE ASU FOR, D76 C AND E33 NZ SYMM 9606
339 3H1U 1 A, B Ubiquitin 9913
340 5JTJ 2 B Polyubiquitin-B 9606
341 2WX1 1 A, B UBIQUITIN 9913
342 4WUR 2 B Polyubiquitin-B UNP residues 1-76 9606
343 4II3 2 B, D Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
344 5C7J 2 C, D Polyubiquitin-C UNP residues 1-74 9606
345 4S1Z 1 A, B, C, D, E Ubiquitin residues 1-76 9606
346 4XOL 1 A, B Ubiquitin 9606
347 5JP3 2 B, D, F, H Polyubiquitin-B 9606
348 4P4H 3 S, T, U, W, X Ubiquitin-60S ribosomal protein L40 9606
349 5O44 1 A, E Ubiquitin 7370
350 5O44 2 B, C Polyubiquitin-B 9606
351 5O44 3 D, F Polyubiquitin-B 9606
352 3PHD 2 E, F, G, H Polyubiquitin 9606
353 5YIK 2 C, D, F ubiquitin UNP RESIDUES 1-76 9606
354 3N30 1 A, B Ubiquitin 9606
355 3ZLZ 1 A, B UBIQUITIN TRI-UBIQUITIN CHAIN LINKED VIA LYS6. K48R IN BOTH MOLECULES. ISOPEPTIDE LINKAGES ARE NOT RESOLVED. 9606
356 3JVZ 3 X, Y Ubiquitin 9606
357 4DHZ 2 B Ubiquitin aldehyde 9606
358 4DHZ 3 E Ubiquitin 9606
359 5YIJ 2 C, D, G Ubiquitin UNP RESIDUES 1-76 9606
360 5UDH 3 E Ubiquitin C variant Hexa-his N-terminal tagged protein UNP residues 17-92 9606
361 5AIT 3 C, F POLYUBIQUITIN-C UNP RESIDUES 1-76 9913
362 5O6S 1 A, B, C, D, E, F Polyubiquitin-B Variant of ubiquitin identified from phage-display 9606
363 3VFK 1 A ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala 9606
364 5C7M 2 B, C Polyubiquitin-C UNP residues 1-75 9606
365 3JW0 3 X, Y Ubiquitin 9606
366 4LCD 3 E, F Ubiquitin UNP residues 1-75 9606
367 4DDG 2 D, E, F, G, H, I, M, N, O, P, Q, R Polyubiquitin-C 9606
368 5JTV 2 B, D, F, H Polyubiquitin-B 9606
369 5OHN 2 B, D Polyubiquitin-B 9606
370 5TTE 3 F ubiquitin unp residues 1-76 4565
371 2FCQ 1 A, B Ubiquitin residues 1-76 9031
372 3EEC 1 A, B Ubiquitin 9606
373 5VNZ 3 C, F Ubiquitin 9606
374 4NQK 2 E, F, G, H, I, J Ubiquitin UNP residues 76-152 9606
375 6C16 3 D, H Polyubiquitin-B 9606
376 4DDI 2 D, E, F, G, H, I Polyubiquitin-C 9606
377 5H7S 1 E, F Ubiquitin-like 1 9606
378 5EDV 3 E, F, G, H Polyubiquitin-B UNP residues 1-76 9606
379 5CVO 3 C, F Polyubiquitin-B UNP residues 1-76 9606
380 4UF6 2 B, E, H, K POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH- L5 9606
381 5OHM 1 A, C, E, G, I, K Polyubiquitin-C 9598
382 4ZUX 10 X, c, h, m Polyubiquitin-B 9606
383 2DX5 2 B Ubiquitin 9913
384 3OJ4 2 B, E Ubiquitin Ubiquitin, UNP residues 1-76 9606
385 5VO0 3 C, F Ubiquitin 9606
386 6DJW 2 B Ubiquitin 9913
387 2AYO 2 B Ubiquitin 9606
388 5KHY 1 A Polyubiquitin-B 9606
389 5KHY 2 B Polyubiquitin-B 9606
390 6DJX 2 B Ubiquitin 9913
391 4JIO 2 U Ubiquitin 9606
392 4WHV 3 A, F, G, L Polyubiquitin-B unp residues 1-76 9606
393 6FTX 8 N, O Polyubiquitin-B 9606
394 5VZM 1 A Ubiquitin UNP residues 1-76 9606
395 5XK4 1 A Polyubiquitin-B UNP residues 1-76 9606
396 5XK5 1 A Polyubiquitin-B UNP residues 1-76 9606
397 5VEY 2 B Polyubiquitin-B 9606
398 5VF0 1 A Polyubiquitin-B 9606
399 5XBO 1 A Polyubiquitin-B UNP residues 1-76 9606
400 5UJL 1 A, B Ubiquitin residues 1-76 9606
401 5UJN 1 A, B Ubiquitin 9606
402 5GJQ 34 y Polyubiquitin-B UNP RESIDUES 1-76 9606
403 5KGF 8 M, O Ubiquitin 9606
404 2NBD 1 A entity 9606
405 2NBE 1 A entity 9606
406 5A5B 9 9 UBIQUITIN ALDEHYDE 9606
407 2N3U 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
408 2N3V 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
409 2N3W 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
410 2N2K 1 A ubiquitin 9606
411 2N2K 2 B ubiquitin 9606
412 2N13 2 B Ubiquitin 9606
413 2N13 3 C Ubiquitin 9606
414 2MWS 1 A Ubiquitin UNP residues 1-76 9606
415 2MUR 2 B Ubiquitin 9606
416 2MSG 1 A Ubiquitin UNP residuse 1-72 9606
417 2MRO 1 A Polyubiquitin-B Human Ubiquitin 9606
418 2MRE 1 A Polyubiquitin-C unp residues 1-76 9606
419 2MOR 1 A Ubiquitin UNP residues 1-76 9606
420 2MJB 1 A Ubiquitin-60S ribosomal protein L40 Ubiquitin-like 3 domain 9606
421 2MJ5 1 A Polyubiquitin-C UNP residuses 1-76 9606
422 2MI8 1 A Ubiquitin 9606
423 2RU6 1 A Ubiquitin 9606
424 2MCN 2 B Ubiquitin UNP residues 1-76 9606
425 2MBQ 1 A, B Ubiquitin UNP residues 1-76 9606
426 2MBO 1 A, B Ubiquitin UNP residues 1-76 9606
427 2MBH 2 A Ubiquitin 9606
428 2MBB 2 B Polyubiquitin-B UNP P0CG47 residues 1-76 9606
429 2M0X 1 A engineered ubiquitin variant 9606
430 2LZ6 1 A Ubiquitin 9606
431 2LVO 1 A Ubiquitin 9606
432 2LVP 1 A, B Ubiquitin 9606
433 2LVQ 1 A, B Ubiquitin 9606
434 2RSU 1 A Ubiquitin 9606
435 2LJ5 1 A Ubiquitin 9606
436 2LD9 1 A Ubiquitin 9606
437 2L3Z 1 A Ubiquitin UNP Residues 1-76 9606
438 2L0T 1 A Ubiquitin 9606
439 2L0F 1 A Ubiquitin 9606
440 2L00 2 B Ubiquitin ubiquitin core domain 4932
441 2RR9 1 A, B ubiquitin 9606
442 2KWV 2 B Ubiquitin 9606
443 2KWU 2 B Ubiquitin 9606
444 2KTF 1 A Ubiquitin 9606
445 2KOX 1 A Ubiquitin 9606
446 2KN5 1 A Ubiquitin 9606
447 2KLG 1 A Ubiquitin 9606
448 2KJH 2 B Ubiquitin 9606
449 2KHW 2 B Ubiquitin 9606
450 2KDE 2 B, C Ubiquitin 8355
451 2KDF 2 B, C Ubiquitin 9606
452 2K8B 1 A Ubiquitin 9606
453 2K8C 1 A Ubiquitin 9606
454 2K6D 2 B Ubiquitin ubiquitin 9606
455 2K39 1 A Ubiquitin 8355
456 2JZZ 1 A Ubiquitin 9606
457 2JY6 1 A Ubiquitin protein 9606
458 2JWZ 1 A Ubiquitin 4932
459 2JVC 1 A ubiquitin_like protein
460 2JT4 2 B Ubiquitin SH3 domain sequence database residues 350-420 4932
461 2Z59 2 B Ubiquitin 9606
462 2JRI 2 B, C UBC protein sequence database residues 318-469 9606
463 2PE9 1 A, B Ubiquitin 9606
464 2PEA 1 A, B Ubiquitin 9606
465 2NR2 1 A Ubiquitin 9606
466 2G3Q 2 B Ubiquitin 4932
467 2DEN 2 B Ubiquitin 9606
468 2FUH 2 B Ubiquitin Ubiquitin 10116
469 1ZW7 1 A Ubiquitin 4932
470 1ZGU 2 B Ubiquitin 9606
471 1YX5 2 B Ubiquitin Sequence Database Residues 1-76 9606
472 1YX6 2 B Ubiquitin Sequence Database Residues 1-76 9606
473 2BGF 1 A, B DI-UBIQUITIN ISOPEPTIDE BOND BETWEEN GLY76A AND LYS48B 9606
474 1XQQ 1 A ubiquitin 9606
475 1WR1 1 A Ubiquitin 4932
476 1V80 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
477 1V81 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
478 1Q5W 2 B Ubiquitin 9606
479 1Q0W 2 B Ubiquitin 4932
480 1OTR 2 B Ubiquitin 4932
481 1G6J 1 A UBIQUITIN 9606
482 1FXT 2 B UBIQUITIN 9606
483 1D3Z 1 A PROTEIN (UBIQUITIN) 9606
484 1C3T 1 A PROTEIN (1D8 UBIQUITIN) 9606
485 1UD7 1 A PROTEIN (UBIQUITIN CORE MUTANT 1D7) 9606