Sequence Similarity Clusters for the Entities in PDB 3VHT

Entity #1 | Chains: A
Green fluorescent protein protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49906
95 % 228 254 68 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 241 294 37
70 % 246 300 33
50 % 247 302 79
40 % 257 315 95
30 % 439 530 15
Entity #2 | Chains: B
Green fluorescent protein,ATPase WRNIP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49907
95 % 1 1 41309
90 % 3 4 13343
70 % 3 4 12506
50 % 3 4 11126
40 % 3 4 9998
30 % 3 4 8077
Entity #3 | Chains: C
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 180 400 4
95 % 191 424 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 200 437 6
70 % 213 470 8
50 % 219 491 10
40 % 231 518 15
30 % 279 680 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5TOG 1 A Polyubiquitin-B 9606
2 5NVG 1 A Polyubiquitin-B 9606
3 5TOF 1 A Polyubiquitin-B 9606
4 4XOF 1 A Ubiquitin 9606
5 3A9J 1 A Ubiquitin 10090
6 3A9J 2 B Ubiquitin 10090
7 5GOB 1 A Ubiquitin 9606
8 5GOB 2 B D-ubiquitin 9606
9 5W46 1 A, B Polyubiquitin-B 9606
10 5GOD 1 A, B Ubiquitin 9606
11 5GOD 2 C, D D-ubiquitin 9606
12 5XVE 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
13 3NHE 2 B Ubiquitin 9606
14 5DK8 1 A, B Polyubiquitin-B Ubiquitin, UNP residues 2-75 9606
15 1YJ1 1 A, B, C Ubiquitin residues 1-76
16 5NL4 1 A, B, C Polyubiquitin-C 9606
17 5V1Y 2 C, D Ubiquitin 9606
18 4M0W 2 B Ubiquitin 9913
19 4Y1H 1 A Ubiquitin-40S ribosomal protein S27a K33 linked tri-Ubiquitin. 9913
20 2GBJ 1 A, B Ubiquitin 9606
21 1YIW 1 A, B, C Ubiquitin 9031
22 1OGW 1 A UBIQUITIN LEF IS (4S)-5-FLUORO-L-LEUCINE RESIDUES 1-76 9606
23 2WWZ 1 A, B UBIQUITIN 9913
24 5KYC 2 C Polyubiquitin-B UNP residues 1-76 9606
25 4IUM 2 B Ubiquitin UNP residues 1-75 9606
26 4GU2 1 A Ubiquitin 5759
27 3A9K 1 A Ubiquitin 10090
28 3A9K 2 B Ubiquitin 10090
29 4HK2 1 A, B, C, D Ubiquitin 9606
30 5KYF 2 C Polyubiquitin-B UNP residues 1-76 9606
31 1XD3 2 B, D UBC protein 9606
32 5NLF 1 A, B, C Polyubiquitin-C 9606
33 5V5H 2 B Ubiquitin variant CC.2 32630
34 4ZPZ 1 A, B Polyubiquitin-B ubiquitin, UNP residues 1-73 9606
35 4UN2 1 A UBIQUITIN 9606
36 5VBT 1 A, B UBH04 32630
37 4PIH 1 A, B Ubiquitin 9606
38 2ZCC 1 A, B, C Ubiquitin 9913
39 4PIJ 1 A, B Ubiquitin 9606
40 5NLI 1 A, B, C Polyubiquitin-C 9606
41 5O6T 2 C, D Polyubiquitin-B A variant of ubiquitin identified from a phage-display library 9606
42 4V3L 2 B, D POLYUBIQUITIN-C G76 IN CHAIN B IS COVALENTLY LINKED TO K85 SIDE CHAIN IN CHAIN A. RESIDUES 77-152 9606
43 4LJO 2 B Polyubiquitin-C unp residues 77-152 9913
44 4FBJ 2 B NEDD8 9606
45 3BY4 2 B Ubiquitin 9606
46 5K9P 1 A Polyubiquitin-B 9606
47 5NLJ 1 A, B, C Polyubiquitin-B 9606
48 5KYD 1 D Polyubiquitin-B UNP residues 1-76 9606
49 4XYZ 1 A, B Polyubiquitin-C UNP residues 77-152 9913
50 3M3J 1 A, B, C, D, E, F Ubiquitin 9913
51 2ZNV 2 B, E Ubiquitin 10090
52 2ZNV 3 C, F Ubiquitin 10090
53 2GBM 1 A, B, C, D Ubiquitin 9606
54 5OXH 1 A Ubiquitin T66V/L67N mutant 9606
55 5EMZ 1 A, C, E Polyubiquitin-B 9606
56 5EMZ 2 B, D, F Polyubiquitin-B 9606
57 6B7M 2 B, C Polyubiquitin-C 9606
58 3VUX 1 A, B, C Polyubiquitin-C Ubiquitin 9606
59 2GBN 1 A Ubiquitin 9606
60 2ZCB 1 A, B, C Ubiquitin 9606
61 5OXI 1 A, B Ubiquitin L67S mutant 9606
62 4K1R 2 B, D Polyubiquitin-C 9606
63 3PRP 2 B, D Ubiquitin 9606 3.4.19.12 | Details
64 4I6N 2 B, D Ubiquitin 9606
65 3V6C 2 B Ubiquitin 9606
66 5AF5 1 A POLYUBIQUITIN-C 9606
67 5J8P 1 A ubiquitin 9606
68 5J8P 2 B D-ubiquitin 9606
69 1NDD 1 A, B, C, D PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8) HUMAN NEDD8 UBIQUITIN-LIKE PROTEIN MONOMER WITH 4 MOLECULES IN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT 9606
70 4K7U 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
71 6EI1 2 B Polyubiquitin-B 9606
72 6FGE 2 C Polyubiquitin-B 9606
73 2J7Q 2 B, D UBIQUITIN THE C-TERMINAL GLY 76 IS REPLACED BY THE VINYLMETHYLESTER MOIETY UBIQUITIN FUSED TO VINYLMETHYLESTER, UBVME, RESIDUES 1-75 9606
74 3NS8 1 A, B Ubiquitin 9606
75 5GOJ 1 A Ubiquitin 9606
76 5GOJ 2 B D-ubiquitin 9606
77 1UBI 1 A UBIQUITIN 9606
78 2D3G 1 A, B ubiquitin 9913
79 5GOC 1 A Ubiquitin 9606
80 5GOC 2 D D-ubiquitin 9606
81 5X3N 1 A Polyubiquitin-B UNP residues 1-76 9606
82 5XIU 2 B Ubiquitin-40S ribosomal protein S27a 10090
83 5TXK 2 B Polyubiquitin-B 9606
84 1UBQ 1 A UBIQUITIN 9606
85 6B7O 2 B, C Polyubiquitin-C 9606
86 4ZFR 2 B ubiquitin unp residues 77-152 9606
87 4MSM 2 B, D Ubiquitin UNP residues 77-152 9606
88 4HJK 1 A Ubiquitin UNP residues 87-162 9606
89 6GLC 2 B Polyubiquitin-B 9606
90 3N32 1 A Ubiquitin 9606
91 5L8H 2 B Polyubiquitin-B Recombinant expression followed by chemical synthesis. 9606
92 3ONS 1 A Ubiquitin 9606
93 5XU8 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
94 3MHS 4 D Ubiquitin 9606
95 5M93 1 A, B, C Polyubiquitin-B 9606
96 3K9O 2 B Ubiquitin 9606
97 4K7W 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
98 2HD5 2 B Polyubiquitin residues 1-76 9913
99 5NMC 1 A, B, C Polyubiquitin-C 9606
100 5GOI 1 A, B Ubiquitin 9606
101 5GOI 2 C, D D-ubiquitin 9606
102 1WRD 2 B Ubiquitin 9913
103 5GVI 2 B ubiquitin 10090
104 5GVI 3 C ubiquitin 10090
105 4K7S 1 A, B, C ubiquitin UNP residues 1-73 9606 6.3.2.19 | Details
106 2BKR 2 B NEDDYLIN 9606
107 5CVM 2 B Polyubiquitin-B UNP residues 1-76 9606
108 2FCS 1 A, B Ubiquitin residues 1-76
109 4Q5E 2 B Polyubiquitin 4932 6.3.2.19 | Details
110 5V1Z 2 C, D Ubiquitin 9606
111 3ALB 1 A, B, C, D ubiquitin 9606
112 5D0M 3 B Polyubiquitin-B UNP residues 1-76 9606
113 5XIS 2 B, E Ubiquitin-40S ribosomal protein S27a 10090
114 5XIS 3 C, F Ubiquitin-40S ribosomal protein S27a 10090
115 4PIG 1 A, B, C, D Ubiquitin 9606
116 5X3M 1 A Polyubiquitin-B 9606
117 5X3M 2 D D-ubiquitin D-Ub-S65E-NH2 9606
118 5NL5 1 A, B, C Polyubiquitin-B 9606
119 4MSQ 2 B, D Ubiquitin UNP residues 77-152 9606
120 4LDT 2 B Ubiquitin aldehyde 9606
121 4LDT 4 D Ubiquitin 9606
122 3VUW 1 A, B, C Polyubiquitin-C Ubiquitin 9606
123 3TMP 2 B, D, F, H Polyubiquitin-C Ubiquitin-like 1 9606
124 2QHO 1 A, C, E, G Ubiquitin 9913
125 3H7P 1 A Ubiquitin 9606
126 3H7P 2 B Ubiquitin 9606
127 4WZP 1 A, B, C, D, E, F, G, H ubiquitin phosphorylation at Ser65 UNP residues 1-76 9606
128 3EHV 1 A, B, C Ubiquitin 9606 6.3.2.19 | Details
129 5GO7 1 A Ubiquitin 9606
130 5GO7 2 B D-ubiquitin 9606
131 1P3Q 2 U, V Ubiquitin 9913
132 2OOB 2 B Ubiquitin 9913
133 5ULF 2 B, D Ubiquitin 9606
134 5KYE 2 C, D Polyubiquitin-B UNP residues 1-76 9606
135 4F8C 2 B, D NEDD8 9606
136 5ULH 2 B Ubiquitin 9606
137 3HM3 1 A, B, C, D Ubiquitin 9606
138 5LRW 2 B, D Polyubiquitin-B Gly76 was replaced with 2-bromoethylamine 9606
139 5GOK 1 A Ubiquitin 9606
140 5GOK 2 B D-ubiquitin 9606
141 4WLR 3 C Polyubiquitin-B 9606
142 3WWQ 1 A, D, G, J Ubiquitin 10090
143 3WWQ 2 B, E, H, K Ubiquitin 10090
144 5JG6 2 B, C Polyubiquitin-B 9606
145 3EFU 1 A Ubiquitin 9606
146 4Q5H 2 B Polyubiquitin 4932 6.3.2.19 | Details
147 5AF4 1 A, B, C, D, E, F, G, H UBIQUITIN ISOPEPTIDE LINKAGES BETWEEN A76 C AND B33 NZ, C76 C AND D33 NZ, E76 C AND F33 NZ 9606
148 4V3K 2 B, E POLYUBIQUITIN-C LYS85 IN CHAINS A AND D IS COVALENTLY LINKED TO GLY76 IN CHAINS B AND E, RESPECTIVELY. RESIDUES 77-152 9606
149 4IG7 2 B Ubiquitin 9606
150 2JF5 1 A, B UBIQUITIN ISO-PEPTIDE LINK BETWEEN A-LYS63 AND B-GLY76 9606
151 5MN9 1 A, B Ubiquitin-40S ribosomal protein S27a 9913
152 5WVO 1 A, B Ubiquitin 9606
153 3V6E 2 B Ubiquitin 9606
154 1UZX 2 B UBIQUITIN 9913
155 5YDR 1 A, D Polyubiquitin-B UNP residues 1-73 9606
156 5V5G 2 B, D Ubiquitin variant CC.4 32630
157 1S1Q 2 B, D ubiquitin 9606
158 4LJP 2 B Polyubiquitin-C unp residues 77-152 9913
159 3VUY 1 A, B, C Polyubiquitin-C Ubiquitin 9606
160 3PHW 2 B, D, F, H Ubiquitin-40S ribosomal protein S27a UNP residues 1-75 9606
161 4PQT 2 B Protein UBBP4 unp residues 77-152 9606
162 5BZ0 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin from bovine erythrocytes 9913
163 2GBR 1 A, B, C Ubiquitin 9606
164 4XKL 1 A, C Ubiquitin 9606
165 4FJV 2 B, D Polyubiquitin-C 9606
166 5DFL 1 B Ubiquitin 9606
167 2C7N 2 B, D, F, H, J, L UBIQUITIN 9913
168 5HPS 2 B Ubiquitin variant P1.1 9606
169 5GOH 1 A Ubiquitin 9606
170 5GOH 2 D D-ubiquitin 9606
171 3ZNI 4 D, H, L, P POLYUBIQUITIN-C CARBONYL CARBON OF G76 IN CHIANS D, H, L AND P FORMS AN ISOPEPTIDE LINKAGE WITH THE SIDECHAIN OF K85 IN CHAINS C, G, K AND O, RESPECTIVELY. GSGGS LINKER AT THE N- TERMINUS OF PROTEIN RESULTED FROM CLONING RESIDUES 77-152 9606
172 2G45 2 B, E Ubiquitin 9606
173 5MNJ 2 B, F Polyubiquitin-B gsggs linker at the N-terminus resulted from cloning. G76 in chain B is covalently linked to K85 side chain in Chain A. 9606
174 5ZQ3 2 C, D Ubiquitin 9606
175 5ZQ4 2 C, D ubiquitin 9606
176 4GSW 1 A, B Ubiquitin 5759
177 4RF1 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
178 1SIF 1 A ubiquitin 9606
179 5JBY 1 A, C, E ubiquitin 9606
180 5JBY 2 B, D, F D-ubiquitin 9606
181 5IFR 2 B Polyubiquitin-B 9606
182 2IBI 2 B Ubiquitin 9606
183 5L6H 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
184 5GOG 1 A Ubiquitin 9606
185 5GOG 2 B D-ubiquitin 9606
186 2GBK 1 A, B, C, D Ubiquitin 9606
187 4AUQ 3 C, F POLYUBIQUITIN-C UBIQUITIN, RESIDUES 1-76 9606
188 4NNJ 2 B, D, E Uba1 UNP residues 1-76 4932
189 4Z9S 1 A, B, C, D Ubiquitin-40S ribosomal protein S27a UNP RESIDUES 1-76 9913
190 2XEW 1 A, B, C, D, E, F, G, H, I, J, K, L UBIQUITIN UBIQUITIN POLYMER LINKED THROUGH LYS11 IN AN ISOPEPTIDE LINKAGE 9606
191 2WDT 2 B, D UBIQUITIN C-TERMINAL GLY76 OF WILDTYPE UBIQUITIN IS REPLACED BY A VINYL METHYLESTER MOIETY (UBVME) RESIDUES 1-75 9606
192 1XT9 2 B Neddylin 9606
193 1AAR 1 A, B DI-UBIQUITIN 9913
194 4AP4 3 C, F UBIQUITIN C ISOPEPTIDE AMIDE LINKED TO UBCH5A (CHAIN B AND CHAIN E) RESIDUES 76-152 9606
195 4UEL 2 B POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH-L5 9606
196 4II2 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
197 4ZFT 2 B, D Polyubiquitin-B unp residues 77-152 9606
198 2WX0 1 A, B, E, F UBIQUITIN 9913
199 3A1Q 1 A, D Ubiquitin 10090
200 3A1Q 2 B, E Ubiquitin 10090
201 5HPL 2 C, D Ubiquitin variant R5.4 9606
202 5TR4 2 B, D Ubiquitin 9913
203 4BOS 2 C, E POLYUBIQUITIN-C RESIDUES 1-76 9606
204 3H7S 1 A, B Ubiquitin 9606
205 3C0R 2 B, D Ubiquitin 9606
206 5AIU 3 C, F POLYUBIQUITIN-C CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F UNP RESIDUES 1-76 9606
207 4S22 1 A, B, C, D Ubiquitin residues 77-152 9913
208 2C7M 2 B UBIQUITIN 9913
209 1TBE 1 A, B TETRAUBIQUITIN 9606
210 3PT2 2 B Ubiquitin B 9606
211 5VZW 2 C, D Ubiquitin 9606
212 5V5I 2 B, D Ubiquitin variant CC.1 32630
213 3PRM 2 B, D Ubiquitin 9606 3.4.19.12 | Details
214 4R62 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin 9606
215 5EYA 3 C, D Polyubiquitin-B UNP residues 1-76 9606
216 5GO8 1 A ubiquitin 9606
217 5GO8 2 B D-ubiquitin 9606
218 3A33 2 B Ubiquitin 9606
219 3VHT 3 C Ubiquitin 10090
220 5XIT 1 D, F Ubiquitin-40S ribosomal protein S27a 10090
221 5XIT 3 B, H Ubiquitin-40S ribosomal protein S27a 10090
222 2FCN 1 A, B Ubiquitin residues 1-76
223 4DHJ 2 B, F, J, M Ubiquitin aldehyde 9606
224 4DHJ 3 D, H Ubiquitin 9606
225 3ZNH 2 B POLYUBIQUITIN-B GLY76 IS REPLACED WITH A PROPARGYL GROUP 9606
226 4BBN 2 C POLYUBIQUITIN-B RESIDUES 1-76 9913
227 4BBN 3 F POLYUBIQUITIN-B RESIDUES 229-304 9913
228 4NQL 2 B Ubiquitin 10090
229 4NQL 3 C Ubiquitin 10090
230 1NBF 2 C, D Ubiquitin aldehyde 9606
231 2O6V 1 A, C, E, G Ubiquitin 9606
232 2O6V 2 B, F Ubiquitin 9606
233 2O6V 3 D, H Ubiquitin 9606
234 3OFI 2 C, D Ubiquitin 9606
235 3AUL 1 A, B Polyubiquitin-C Ubiquitin 9606
236 3UGB 2 B Polyubiquitin-C unp residues 1-76 9606
237 5JBV 1 A Ubiquitin 9606
238 5JBV 2 B D-ubiquitin 9606
239 5X3O 1 A Polyubiquitin-B UNP residues 1-76 9606
240 5X3O 2 D D-ubiquitin 9606
241 5ULK 2 B Ubiquitin 9606
242 5ZQ5 2 B, D Ubiquitin 9606
243 3NOB 1 A, B, C, D, E, F, G, H Ubiquitin 9606
244 3IFW 2 B Ubiquitin 9606
245 3N3K 2 B Ubiquitin 9606
246 5UCL 1 A Polyubiquitin-B 9606
247 2FCM 1 A, B Ubiquitin residues 1-76
248 4KSK 2 C, D Polyubiquitin-C unp residues 76-152 9606
249 5L6J 2 B, D Ubiquitin-40S ribosomal protein S31 4932
250 5HPK 2 B Ubiquitin variant NL.1 9606
251 5OHL 2 I, J, K, L, M, N, O, P Polyubiquitin-B 9606
252 3I3T 2 B, D, F, H Ubiquitin 9606
253 5FER 3 C, F Ubiquitin-40S ribosomal protein S27a 9913
254 5IBK 3 C, F Polyubiquitin-B UNP residues 75-150 9606
255 5OHK 2 B Polyubiquitin-B 9606
256 1CMX 2 B, D PROTEIN (UBIQUITIN YUH1-UBAL) UBIQUITIN C-TERMINUS MODIFIED TO AN ALDEHYDE ALL 9606 3.1.2.15 | Details
257 3OJ3 1 A, B, C, D, E, F, G, H Ubiquitin Ubiquitin, UNP residues 1-76 9606
258 5N38 2 B Polyubiquitin-B Ser65 is phosphorylated 9606
259 4HCP 2 B NEDD8 unp residues 1-76 9606
260 3O65 2 B, D, F, H Ubiquitin 9606
261 5CRA 2 C, D Polyubiquitin-B UNP residues 1-75 9606
262 5V69 2 B ME.4 9606
263 5U4P 3 C Ubiquitin-40S ribosomal protein S31 4932
264 5L6I 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
265 5XPK 1 A Ubiquitin 9606
266 5XPK 2 B D-ubiquitin 9606
267 5XDP 1 B D-ubiquitin 9606
268 5XDP 2 A ubiquitin-B K11/48-branched teraubiquitin 9606
269 5O76 3 E, F UbV.pCBL ubiquitin variant 9606
270 5D0K 3 B, E, H, K Polyubiquitin-B UNP residues 1-76 9606
271 5OHV 1 A, C Ubiquitin 9606
272 5KNL 2 B, E Ubiquitin 84753
273 4I6L 2 B Ubiquitin UNP residues 77-150 9606
274 5TUT 2 B Ubiquitin 9606
275 3OLM 2 D Ubiquitin 4932
276 3CMM 2 B, D Ubiquitin 559292
277 4MDK 2 E, F, G, H Ubiquitin UNP residues 76-152 9606
278 5N2W 2 B Polyubiquitin-B Ser65 is phosphorylated to give SEP65 9606
279 4MM3 1 A Ubiquitin UNP residues 1-76 9606
280 2FIF 1 A, C, E Ubiquitin 9913
281 5JQS 2 D Ubiquitin-40S ribosomal protein S27a 9913
282 5YDK 2 B, E, H, K Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
283 5YDK 3 C, D, I, J Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
284 2XBB 2 C, D UBIQUITIN 9913
285 2GMI 3 C Ubiquitin 9606
286 4HCN 2 B Polyubiquitin unp RESIDUES 1-76 4932
287 5J26 1 B Ubiquitin Variant i53 9606
288 3DVG 3 X Ubiquitin D77 9606
289 3DVG 4 Y Ubiquitin 9606
290 1WR6 2 E, F, G, H ubiquitin 9913
291 3LDZ 1 E, F, G Ubiquitin 9913
292 3PTF 2 C, D Polyubiquitin-B Ubiquitin 9606
293 5ZQ7 2 B, D Ubiquitin 9606
294 3RUL 1 A, B, C, D Ubiquitin 9606
295 5BNB 2 E, F, G, I Polyubiquitin-B 9606
296 5LRX 2 B, D Polyubiquitin-B Gly76 was replaced with propargylamide 9606
297 5CAW 2 B, D Polyubiquitin-B phosphorylated at Ser65 Gly76 exchanged with chemical probe, bromopropylamine. The bromide was lost during the coupling. 9606
298 4XOK 1 A, B, C Ubiquitin 9606
299 3MTN 2 B, D UBIQUITIN VARIANT UBV.21.4 9606
300 5ZQ6 2 B, D Ubiquitin 9606
301 5V6A 2 B ME.2 9606
302 5LRV 2 B Polyubiquitin-B Lys11 was replaced with a diaminobutyric acid (DAB) residue 9606
303 5LRV 3 C Polyubiquitin-B Gly76 was replaced with a ligation handle for diubiquitin probe generation 9606
304 3DVN 3 U, X Ubiquitin D77 9606
305 3DVN 4 V, Y Ubiquitin 9606
306 5L8W 3 C Polyubiquitin-B Recombinant expression followed by chemical synthesis 9606
307 1F9J 1 A, B TETRAUBIQUITIN 9606
308 2FID 1 A Ubiquitin 9913
309 5OHP 2 B, C Polyubiquitin-B 9606
310 4HXD 1 A, C Polyubiquitin-C 9606 3.4.19.12 | Details
311 1YD8 1 U, V UBIQUIN 9913
312 4BOZ 2 B, C, E UBIQUITIN-C 9606
313 5HPT 2 B, E, H Ubiquitin variant P2.3 9606
314 3WXG 2 B, E Ubiquitin 10090
315 3WXG 3 C, F Ubiquitin UNP residues 1-72 10090
316 4XKH 1 A, B, D, F, G, I Polyubiquitin-C UNP RESIDUES 77-152 9913
317 3IHP 2 C, D Ubiquitin 9606
318 5LN1 2 U Polyubiquitin-B 9606
319 3K9P 2 B Ubiquitin 9606
320 3DBH 3 I, J, K, L NEDD8 9606
321 4BVU 3 C UBIQUITIN OXYESTER LINK BETWEEN G76 AND UBCH5C S85 9606
322 5CVN 3 D Polyubiquitin-B UNP residues 1-76 9606
323 3JSV 1 A Ubiquitin 9606
324 3JSV 2 B Ubiquitin 9606
325 3DBL 3 I, J, K, L NEDD8 9606
326 3TBL 2 D, E Ubiquitin 9606
327 2HTH 1 A Ubiquitin 9606
328 3KW5 2 B Ubiquitin 9606
329 6EQI 1 A Ubiquitin 9606
330 5E6J 2 B, E ubiquitin 32630
331 5E6J 3 C, F Polyubiquitin-B 32630
332 2NVU 4 I, J NEDD8 9606
333 2XK5 1 A UBIQUITIN 9606
334 2XK5 2 B UBIQUITIN 9606
335 4JQW 2 C Polyubiquitin-C Ubiquitin 9606
336 4RF0 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
337 3KVF 2 B Ubiquitin 9606
338 5AF6 1 A, B, C, D, E UBIQUITIN ISOPEPTIDE BONDS ACROSS BETWEEN CHAINS, A76 C AND D33 NZ, B76 C AND A33 NZ, C76C AND B33 NZ, E76 C AND C33 NZ. ISOPEPTIDE BOND ACROSS THE ASU FOR, D76 C AND E33 NZ SYMM 9606
339 3H1U 1 A, B Ubiquitin 9913
340 5JTJ 2 B Polyubiquitin-B 9606
341 2WX1 1 A, B UBIQUITIN 9913
342 4WUR 2 B Polyubiquitin-B UNP residues 1-76 9606
343 4II3 2 B, D Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
344 5C7J 2 C, D Polyubiquitin-C UNP residues 1-74 9606
345 4S1Z 1 A, B, C, D, E Ubiquitin residues 1-76 9606
346 4XOL 1 A, B Ubiquitin 9606
347 5JP3 2 B, D, F, H Polyubiquitin-B 9606
348 4P4H 3 S, T, U, W, X Ubiquitin-60S ribosomal protein L40 9606
349 3GZN 3 I, J NEDD8 9606
350 5O44 1 A, E Ubiquitin 7370
351 5O44 2 B, C Polyubiquitin-B 9606
352 5O44 3 D, F Polyubiquitin-B 9606
353 3PHD 2 E, F, G, H Polyubiquitin 9606
354 3DBR 3 I, J, K, L NEDD8 9606
355 5YIK 2 C, D, F ubiquitin UNP RESIDUES 1-76 9606
356 3N30 1 A, B Ubiquitin 9606
357 4P5O 5 H, K NEDD8 9606
358 3ZLZ 1 A, B UBIQUITIN TRI-UBIQUITIN CHAIN LINKED VIA LYS6. K48R IN BOTH MOLECULES. ISOPEPTIDE LINKAGES ARE NOT RESOLVED. 9606
359 3JVZ 3 X, Y Ubiquitin 9606
360 4DHZ 2 B Ubiquitin aldehyde 9606
361 4DHZ 3 E Ubiquitin 9606
362 5YIJ 2 C, D, G Ubiquitin UNP RESIDUES 1-76 9606
363 3DQV 1 A, B NEDD8 NEDD8 C-terminus covalently linked to Cul5 Lys724 9606
364 5UDH 3 E Ubiquitin C variant Hexa-his N-terminal tagged protein UNP residues 17-92 9606
365 5AIT 3 C, F POLYUBIQUITIN-C UNP RESIDUES 1-76 9913
366 5O6S 1 A, B, C, D, E, F Polyubiquitin-B Variant of ubiquitin identified from phage-display 9606
367 3VFK 1 A ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala 9606
368 5C7M 2 B, C Polyubiquitin-C UNP residues 1-75 9606
369 1R4M 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
370 3JW0 3 X, Y Ubiquitin 9606
371 4LCD 3 E, F Ubiquitin UNP residues 1-75 9606
372 4DDG 2 D, E, F, G, H, I, M, N, O, P, Q, R Polyubiquitin-C 9606
373 5JTV 2 B, D, F, H Polyubiquitin-B 9606
374 5OHN 2 B, D Polyubiquitin-B 9606
375 5TTE 3 F ubiquitin unp residues 1-76 4565
376 2FCQ 1 A, B Ubiquitin residues 1-76 9031
377 3EEC 1 A, B Ubiquitin 9606
378 5VNZ 3 C, F Ubiquitin 9606
379 4NQK 2 E, F, G, H, I, J Ubiquitin UNP residues 76-152 9606
380 4DDI 2 D, E, F, G, H, I Polyubiquitin-C 9606
381 5H7S 1 E, F Ubiquitin-like 1 9606
382 5EDV 3 E, F, G, H Polyubiquitin-B UNP residues 1-76 9606
383 5CVO 3 C, F Polyubiquitin-B UNP residues 1-76 9606
384 4UF6 2 B, E, H, K POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH- L5 9606
385 5OHM 1 A, C, E, G, I, K Polyubiquitin-C 9598
386 4ZUX 10 X, c, h, m Polyubiquitin-B 9606
387 2DX5 2 B Ubiquitin 9913
388 3OJ4 2 B, E Ubiquitin Ubiquitin, UNP residues 1-76 9606
389 1R4N 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
390 5VO0 3 C, F Ubiquitin 9606
391 2AYO 2 B Ubiquitin 9606
392 5KHY 1 A Polyubiquitin-B 9606
393 5KHY 2 B Polyubiquitin-B 9606
394 4JIO 2 U Ubiquitin 9606
395 4WHV 3 A, F, G, L Polyubiquitin-B unp residues 1-76 9606
396 5VZM 1 A Ubiquitin UNP residues 1-76 9606
397 5XK4 1 A Polyubiquitin-B UNP residues 1-76 9606
398 5XK5 1 A Polyubiquitin-B UNP residues 1-76 9606
399 5VEY 2 B Polyubiquitin-B 9606
400 5VF0 1 A Polyubiquitin-B 9606
401 5XBO 1 A Polyubiquitin-B UNP residues 1-76 9606
402 5UJL 1 A, B Ubiquitin residues 1-76 9606
403 5GJQ 34 y Polyubiquitin-B UNP RESIDUES 1-76 9606
404 5KGF 8 M, O Ubiquitin 9606
405 2NBD 1 A entity 9606
406 2NBE 1 A entity 9606
407 2N7K 1 A NEDD8 9606
408 5A5B 9 9 UBIQUITIN ALDEHYDE 9606
409 2N3U 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
410 2N3V 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
411 2N3W 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
412 2N2K 1 A ubiquitin 9606
413 2N2K 2 B ubiquitin 9606
414 2N13 2 B Ubiquitin 9606
415 2N13 3 C Ubiquitin 9606
416 2MWS 1 A Ubiquitin UNP residues 1-76 9606
417 2MUR 2 B Ubiquitin 9606
418 2MSG 1 A Ubiquitin UNP residuse 1-72 9606
419 2MRO 1 A Polyubiquitin-B Human Ubiquitin 9606
420 2MRE 1 A Polyubiquitin-C unp residues 1-76 9606
421 2MOR 1 A Ubiquitin UNP residues 1-76 9606
422 2MJB 1 A Ubiquitin-60S ribosomal protein L40 Ubiquitin-like 3 domain 9606
423 2MJ5 1 A Polyubiquitin-C UNP residuses 1-76 9606
424 2MI8 1 A Ubiquitin 9606
425 2RU6 1 A Ubiquitin 9606
426 2MCN 2 B Ubiquitin UNP residues 1-76 9606
427 2MBQ 1 A, B Ubiquitin UNP residues 1-76 9606
428 2MBO 1 A, B Ubiquitin UNP residues 1-76 9606
429 2MBH 2 A Ubiquitin 9606
430 2MBB 2 B Polyubiquitin-B UNP P0CG47 residues 1-76 9606
431 2M0X 1 A engineered ubiquitin variant 9606
432 2LZ6 1 A Ubiquitin 9606
433 2LVO 1 A Ubiquitin 9606
434 2LVP 1 A, B Ubiquitin 9606
435 2LVQ 1 A, B Ubiquitin 9606
436 2RSU 1 A Ubiquitin 9606
437 2LJ5 1 A Ubiquitin 9606
438 2LD9 1 A Ubiquitin 9606
439 2L3Z 1 A Ubiquitin UNP Residues 1-76 9606
440 2L0T 1 A Ubiquitin 9606
441 2L0F 1 A Ubiquitin 9606
442 2L00 2 B Ubiquitin ubiquitin core domain 4932
443 2RR9 1 A, B ubiquitin 9606
444 2KX0 1 A ubiquitin B 9606
445 2KWV 2 B Ubiquitin 9606
446 2KWU 2 B Ubiquitin 9606
447 2KTF 1 A Ubiquitin 9606
448 2KOX 1 A Ubiquitin 9606
449 2KO3 1 A NEDD8 9606
450 2KN5 1 A Ubiquitin 9606
451 2KLG 1 A Ubiquitin 9606
452 2KJH 2 B Ubiquitin 9606
453 2KHW 2 B Ubiquitin 9606
454 2KDE 2 B, C Ubiquitin 8355
455 2KDF 2 B, C Ubiquitin 9606
456 2K8B 1 A Ubiquitin 9606
457 2K8C 1 A Ubiquitin 9606
458 2K6D 2 B Ubiquitin ubiquitin 9606
459 2K39 1 A Ubiquitin 8355
460 2K25 1 A UBB 9606
461 2JZZ 1 A Ubiquitin 9606
462 2JY6 1 A Ubiquitin protein 9606
463 2JWZ 1 A Ubiquitin 4932
464 2JVC 1 A ubiquitin_like protein
465 2JT4 2 B Ubiquitin SH3 domain sequence database residues 350-420 4932
466 2Z59 2 B Ubiquitin 9606
467 2JRI 2 B, C UBC protein sequence database residues 318-469 9606
468 2PE9 1 A, B Ubiquitin 9606
469 2PEA 1 A, B Ubiquitin 9606
470 2NR2 1 A Ubiquitin 9606
471 2G3Q 2 B Ubiquitin 4932
472 2DEN 2 B Ubiquitin 9606
473 2FUH 2 B Ubiquitin Ubiquitin 10116
474 1ZW7 1 A Ubiquitin 4932
475 1ZGU 2 B Ubiquitin 9606
476 1YX5 2 B Ubiquitin Sequence Database Residues 1-76 9606
477 1YX6 2 B Ubiquitin Sequence Database Residues 1-76 9606
478 2BGF 1 A, B DI-UBIQUITIN ISOPEPTIDE BOND BETWEEN GLY76A AND LYS48B 9606
479 1XQQ 1 A ubiquitin 9606
480 1WR1 1 A Ubiquitin 4932
481 1V80 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
482 1V81 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
483 1Q5W 2 B Ubiquitin 9606
484 1Q0W 2 B Ubiquitin 4932
485 1OTR 2 B Ubiquitin 4932
486 1G6J 1 A UBIQUITIN 9606
487 1FXT 2 B UBIQUITIN 9606
488 1D3Z 1 A PROTEIN (UBIQUITIN) 9606
489 1C3T 1 A PROTEIN (1D8 UBIQUITIN) 9606
490 1UD7 1 A PROTEIN (UBIQUITIN CORE MUTANT 1D7) 9606
491 1BT0 1 A PROTEIN (UBIQUITIN-LIKE PROTEIN 7, RUB1) 3702