Sequence Similarity Clusters for the Entities in PDB 3VHT

Entity #1 | Chains: A
Green fluorescent protein protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59441
95 % 223 248 65 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 235 287 36
70 % 238 291 43
50 % 239 292 80
40 % 240 293 96
30 % 429 513 17
Entity #2 | Chains: B
Green fluorescent protein,ATPase WRNIP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57537
95 % 1 1 40968
90 % 1 1 39121
70 % 3 4 11177
50 % 3 4 10019
40 % 3 4 9116
30 % 3 4 7981
Entity #3 | Chains: C
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 142 321 4
95 % 176 396 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 190 423 6
70 % 199 446 8
50 % 205 467 11
40 % 216 491 15
30 % 439 1044 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5TOG 1 A Polyubiquitin-B 9606
2 5NVG 1 A Polyubiquitin-B 9606
3 5TOF 1 A Polyubiquitin-B 9606
4 4XOF 1 A Ubiquitin 9606
5 3A9J 1 A Ubiquitin 10090
6 3A9J 2 B Ubiquitin 10090
7 5GOB 1 A Ubiquitin 9606
8 5GOB 2 B D-ubiquitin 9606
9 5W46 1 A, B Polyubiquitin-B 9606
10 5GOD 1 A, B Ubiquitin 9606
11 5GOD 2 C, D D-ubiquitin 9606
12 3NHE 2 B Ubiquitin 9606
13 5DK8 1 A, B Polyubiquitin-B Ubiquitin, UNP residues 2-75 9606
14 1YJ1 1 A, B, C Ubiquitin residues 1-76
15 5NL4 1 A, B, C Polyubiquitin-C 9606
16 5V1Y 2 C, D Ubiquitin 9606
17 4M0W 2 B Ubiquitin 9913
18 4Y1H 1 A Ubiquitin-40S ribosomal protein S27a K33 linked tri-Ubiquitin. 9913
19 2GBJ 1 A, B Ubiquitin 9606
20 1YIW 1 A, B, C Ubiquitin 9031
21 1OGW 1 A UBIQUITIN LEF IS (4S)-5-FLUORO-L-LEUCINE RESIDUES 1-76 9606
22 2WWZ 1 A, B UBIQUITIN 9913
23 5KYC 2 C Polyubiquitin-B UNP residues 1-76 9606
24 4IUM 2 B Ubiquitin UNP residues 1-75 9606
25 4GU2 1 A Ubiquitin 5759
26 3A9K 1 A Ubiquitin 10090
27 3A9K 2 B Ubiquitin 10090
28 4HK2 1 A, B, C, D Ubiquitin 9606
29 5KYF 2 C Polyubiquitin-B UNP residues 1-76 9606
30 1XD3 2 B, D UBC protein 9606
31 5NLF 1 A, B, C Polyubiquitin-C 9606
32 5V5H 2 B Ubiquitin variant CC.2 32630
33 4ZPZ 1 A, B Polyubiquitin-B ubiquitin, UNP residues 1-73 9606
34 4UN2 1 A UBIQUITIN 9606
35 5VBT 1 A, B UBH04 32630
36 4PIH 1 A, B Ubiquitin 9606
37 2ZCC 1 A, B, C Ubiquitin 9913
38 4PIJ 1 A, B Ubiquitin 9606
39 5NLI 1 A, B, C Polyubiquitin-C 9606
40 5O6T 2 C, D Polyubiquitin-B A variant of ubiquitin identified from a phage-display library 9606
41 4V3L 2 B, D POLYUBIQUITIN-C G76 IN CHAIN B IS COVALENTLY LINKED TO K85 SIDE CHAIN IN CHAIN A. RESIDUES 77-152 9606
42 4LJO 2 B Polyubiquitin-C unp residues 77-152 9913
43 4FBJ 2 B NEDD8 9606
44 3BY4 2 B Ubiquitin 9606
45 5K9P 1 A Polyubiquitin-B 9606
46 5NLJ 1 A, B, C Polyubiquitin-B 9606
47 5KYD 1 D Polyubiquitin-B UNP residues 1-76 9606
48 4XYZ 1 A, B Polyubiquitin-C UNP residues 77-152 9913
49 3M3J 1 A, B, C, D, E, F Ubiquitin 9913
50 2ZNV 2 B, E Ubiquitin 10090
51 2ZNV 3 C, F Ubiquitin 10090
52 2GBM 1 A, B, C, D Ubiquitin 9606
53 5OXH 1 A Ubiquitin T66V/L67N mutant 9606
54 5EMZ 1 A, C, E Polyubiquitin-B 9606
55 5EMZ 2 B, D, F Polyubiquitin-B 9606
56 3VUX 1 A, B, C Polyubiquitin-C Ubiquitin 9606
57 2GBN 1 A Ubiquitin 9606
58 2ZCB 1 A, B, C Ubiquitin 9606
59 5OXI 1 A, B Ubiquitin L67S mutant 9606
60 4K1R 2 B, D Polyubiquitin-C 9606
61 3PRP 2 B, D Ubiquitin 9606 3.4.19.12 | Details
62 4I6N 2 B, D Ubiquitin 9606
63 3V6C 2 B Ubiquitin 9606
64 5AF5 1 A POLYUBIQUITIN-C 9606
65 5J8P 1 A ubiquitin 9606
66 5J8P 2 B D-ubiquitin 9606
67 1NDD 1 A, B, C, D PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8) HUMAN NEDD8 UBIQUITIN-LIKE PROTEIN MONOMER WITH 4 MOLECULES IN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT 9606
68 4K7U 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
69 2J7Q 2 B, D UBIQUITIN THE C-TERMINAL GLY 76 IS REPLACED BY THE VINYLMETHYLESTER MOIETY UBIQUITIN FUSED TO VINYLMETHYLESTER, UBVME, RESIDUES 1-75 9606
70 3NS8 1 A, B Ubiquitin 9606
71 5GOJ 1 A Ubiquitin 9606
72 5GOJ 2 B D-ubiquitin 9606
73 1UBI 1 A UBIQUITIN 9606
74 2D3G 1 A, B ubiquitin 9913
75 5GOC 1 A Ubiquitin 9606
76 5GOC 2 D D-ubiquitin 9606
77 5X3N 1 A Polyubiquitin-B UNP residues 1-76 9606
78 1UBQ 1 A UBIQUITIN 9606
79 4ZFR 2 B ubiquitin unp residues 77-152 9606
80 4MSM 2 B, D Ubiquitin UNP residues 77-152 9606
81 4HJK 1 A Ubiquitin UNP residues 87-162 9606
82 3N32 1 A Ubiquitin 9606
83 5L8H 2 B Polyubiquitin-B Recombinant expression followed by chemical synthesis. 9606
84 3ONS 1 A Ubiquitin 9606
85 3MHS 4 D Ubiquitin 9606
86 5M93 1 A, B, C Polyubiquitin-B 9606
87 3K9O 2 B Ubiquitin 9606
88 4K7W 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
89 2HD5 2 B Polyubiquitin residues 1-76 9913
90 5NMC 1 A, B, C Polyubiquitin-C 9606
91 5GOI 1 A, B Ubiquitin 9606
92 5GOI 2 C, D D-ubiquitin 9606
93 1WRD 2 B Ubiquitin 9913
94 5GVI 2 B ubiquitin 10090
95 5GVI 3 C ubiquitin 10090
96 4K7S 1 A, B, C ubiquitin UNP residues 1-73 9606 6.3.2.19 | Details
97 2BKR 2 B NEDDYLIN 9606
98 5CVM 2 B Polyubiquitin-B UNP residues 1-76 9606
99 2FCS 1 A, B Ubiquitin residues 1-76
100 4Q5E 2 B Polyubiquitin 4932 6.3.2.19 | Details
101 5V1Z 2 C, D Ubiquitin 9606
102 3ALB 1 A, B, C, D ubiquitin 9606
103 5D0M 3 B Polyubiquitin-B UNP residues 1-76 9606
104 4PIG 1 A, B, C, D Ubiquitin 9606
105 5X3M 1 A Polyubiquitin-B 9606
106 5X3M 2 D D-ubiquitin D-Ub-S65E-NH2 9606
107 5NL5 1 A, B, C Polyubiquitin-B 9606
108 4MSQ 2 B, D Ubiquitin UNP residues 77-152 9606
109 4LDT 2 B Ubiquitin aldehyde 9606
110 4LDT 4 D Ubiquitin 9606
111 3VUW 1 A, B, C Polyubiquitin-C Ubiquitin 9606
112 3TMP 2 B, D, F, H Polyubiquitin-C Ubiquitin-like 1 9606
113 2QHO 1 A, C, E, G Ubiquitin 9913
114 3H7P 1 A Ubiquitin 9606
115 3H7P 2 B Ubiquitin 9606
116 4WZP 1 A, B, C, D, E, F, G, H ubiquitin phosphorylation at Ser65 UNP residues 1-76 9606
117 3EHV 1 A, B, C Ubiquitin 9606 6.3.2.19 | Details
118 5GO7 1 A Ubiquitin 9606
119 5GO7 2 B D-ubiquitin 9606
120 1P3Q 2 U, V Ubiquitin 9913
121 2OOB 2 B Ubiquitin 9913
122 5ULF 2 B, D Ubiquitin 9606
123 5KYE 2 C, D Polyubiquitin-B UNP residues 1-76 9606
124 4F8C 2 B, D NEDD8 9606
125 5ULH 2 B Ubiquitin 9606
126 3HM3 1 A, B, C, D Ubiquitin 9606
127 5LRW 2 B, D Polyubiquitin-B Gly76 was replaced with 2-bromoethylamine 9606
128 5GOK 1 A Ubiquitin 9606
129 5GOK 2 B D-ubiquitin 9606
130 4WLR 3 C Polyubiquitin-B 9606
131 3WWQ 1 A, D, G, J Ubiquitin 10090
132 3WWQ 2 B, E, H, K Ubiquitin 10090
133 5JG6 2 B, C Polyubiquitin-B 9606
134 3EFU 1 A Ubiquitin 9606
135 4Q5H 2 B Polyubiquitin 4932 6.3.2.19 | Details
136 5AF4 1 A, B, C, D, E, F, G, H UBIQUITIN ISOPEPTIDE LINKAGES BETWEEN A76 C AND B33 NZ, C76 C AND D33 NZ, E76 C AND F33 NZ 9606
137 4V3K 2 B, E POLYUBIQUITIN-C LYS85 IN CHAINS A AND D IS COVALENTLY LINKED TO GLY76 IN CHAINS B AND E, RESPECTIVELY. RESIDUES 77-152 9606
138 4IG7 2 B Ubiquitin 9606
139 2JF5 1 A, B UBIQUITIN ISO-PEPTIDE LINK BETWEEN A-LYS63 AND B-GLY76 9606
140 5MN9 1 A, B Ubiquitin-40S ribosomal protein S27a 9913
141 5WVO 1 A, B Ubiquitin 9606
142 3V6E 2 B Ubiquitin 9606
143 1UZX 2 B UBIQUITIN 9913
144 5V5G 2 B, D Ubiquitin variant CC.4 32630
145 1S1Q 2 B, D ubiquitin 9606
146 4LJP 2 B Polyubiquitin-C unp residues 77-152 9913
147 3VUY 1 A, B, C Polyubiquitin-C Ubiquitin 9606
148 3PHW 2 B, D, F, H Ubiquitin-40S ribosomal protein S27a UNP residues 1-75 9606
149 4PQT 2 B Protein UBBP4 unp residues 77-152 9606
150 5BZ0 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin from bovine erythrocytes 9913
151 2GBR 1 A, B, C Ubiquitin 9606
152 4XKL 1 A, C Ubiquitin 9606
153 4FJV 2 B, D Polyubiquitin-C 9606
154 5DFL 1 B Ubiquitin 9606
155 2C7N 2 B, D, F, H, J, L UBIQUITIN 9913
156 5HPS 2 B Ubiquitin variant P1.1 9606
157 5GOH 1 A Ubiquitin 9606
158 5GOH 2 D D-ubiquitin 9606
159 3ZNI 4 D, H, L, P POLYUBIQUITIN-C CARBONYL CARBON OF G76 IN CHIANS D, H, L AND P FORMS AN ISOPEPTIDE LINKAGE WITH THE SIDECHAIN OF K85 IN CHAINS C, G, K AND O, RESPECTIVELY. GSGGS LINKER AT THE N- TERMINUS OF PROTEIN RESULTED FROM CLONING RESIDUES 77-152 9606
160 2G45 2 B, E Ubiquitin 9606
161 5MNJ 2 B, F Polyubiquitin-B gsggs linker at the N-terminus resulted from cloning. G76 in chain B is covalently linked to K85 side chain in Chain A. 9606
162 4GSW 1 A, B Ubiquitin 5759
163 4RF1 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
164 1SIF 1 A ubiquitin 9606
165 5JBY 1 A, C, E ubiquitin 9606
166 5JBY 2 B, D, F D-ubiquitin 9606
167 5IFR 2 B Polyubiquitin-B 9606
168 2IBI 2 B Ubiquitin 9606
169 5L6H 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
170 5GOG 1 A Ubiquitin 9606
171 5GOG 2 B D-ubiquitin 9606
172 2GBK 1 A, B, C, D Ubiquitin 9606
173 4AUQ 3 C, F POLYUBIQUITIN-C UBIQUITIN, RESIDUES 1-76 9606
174 4NNJ 2 B, D, E Uba1 UNP residues 1-76 4932
175 4Z9S 1 A, B, C, D Ubiquitin-40S ribosomal protein S27a UNP RESIDUES 1-76 9913
176 2XEW 1 A, B, C, D, E, F, G, H, I, J, K, L UBIQUITIN UBIQUITIN POLYMER LINKED THROUGH LYS11 IN AN ISOPEPTIDE LINKAGE 9606
177 2WDT 2 B, D UBIQUITIN C-TERMINAL GLY76 OF WILDTYPE UBIQUITIN IS REPLACED BY A VINYL METHYLESTER MOIETY (UBVME) RESIDUES 1-75 9606
178 1XT9 2 B Neddylin 9606
179 1AAR 1 A, B DI-UBIQUITIN 9913
180 4AP4 3 C, F UBIQUITIN C ISOPEPTIDE AMIDE LINKED TO UBCH5A (CHAIN B AND CHAIN E) RESIDUES 76-152 9606
181 4UEL 2 B POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH-L5 9606
182 4II2 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
183 4ZFT 2 B, D Polyubiquitin-B unp residues 77-152 9606
184 2WX0 1 A, B, E, F UBIQUITIN 9913
185 3A1Q 1 A, D Ubiquitin 10090
186 3A1Q 2 B, E Ubiquitin 10090
187 5HPL 2 C, D Ubiquitin variant R5.4 9606
188 5TR4 2 B, D Ubiquitin 9913
189 4BOS 2 C, E POLYUBIQUITIN-C RESIDUES 1-76 9606
190 3H7S 1 A, B Ubiquitin 9606
191 3C0R 2 B, D Ubiquitin 9606
192 5AIU 3 C, F POLYUBIQUITIN-C CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F UNP RESIDUES 1-76 9606
193 4S22 1 A, B, C, D Ubiquitin residues 77-152 9913
194 2C7M 2 B UBIQUITIN 9913
195 1TBE 1 A, B TETRAUBIQUITIN 9606
196 3PT2 2 B Ubiquitin B 9606
197 5VZW 2 C, D Ubiquitin 9606
198 5V5I 2 B, D Ubiquitin variant CC.1 32630
199 3PRM 2 B, D Ubiquitin 9606 3.4.19.12 | Details
200 4R62 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin 9606
201 5EYA 3 C, D Polyubiquitin-B UNP residues 1-76 9606
202 5GO8 1 A ubiquitin 9606
203 5GO8 2 B D-ubiquitin 9606
204 3A33 2 B Ubiquitin 9606
205 3VHT 3 C Ubiquitin 10090
206 2FCN 1 A, B Ubiquitin residues 1-76
207 4DHJ 2 B, F, J, M Ubiquitin aldehyde 9606
208 4DHJ 3 D, H Ubiquitin 9606
209 3ZNH 2 B POLYUBIQUITIN-B GLY76 IS REPLACED WITH A PROPARGYL GROUP 9606
210 4BBN 2 C POLYUBIQUITIN-B RESIDUES 1-76 9913
211 4BBN 3 F POLYUBIQUITIN-B RESIDUES 229-304 9913
212 4NQL 2 B Ubiquitin 10090
213 4NQL 3 C Ubiquitin 10090
214 1NBF 2 C, D Ubiquitin aldehyde 9606
215 2O6V 1 A, C, E, G Ubiquitin 9606
216 2O6V 2 B, F Ubiquitin 9606
217 2O6V 3 D, H Ubiquitin 9606
218 3OFI 2 C, D Ubiquitin 9606
219 3AUL 1 A, B Polyubiquitin-C Ubiquitin 9606
220 3UGB 2 B Polyubiquitin-C unp residues 1-76 9606
221 5JBV 1 A Ubiquitin 9606
222 5JBV 2 B D-ubiquitin 9606
223 5X3O 1 A Polyubiquitin-B UNP residues 1-76 9606
224 5X3O 2 D D-ubiquitin 9606
225 5ULK 2 B Ubiquitin 9606
226 3NOB 1 A, B, C, D, E, F, G, H Ubiquitin 9606
227 3IFW 2 B Ubiquitin 9606
228 3N3K 2 B Ubiquitin 9606
229 5UCL 1 A Polyubiquitin-B 9606
230 2FCM 1 A, B Ubiquitin residues 1-76
231 4KSK 2 C, D Polyubiquitin-C unp residues 76-152 9606
232 5L6J 2 B, D Ubiquitin-40S ribosomal protein S31 4932
233 5HPK 2 B Ubiquitin variant NL.1 9606
234 5OHL 2 I, J, K, L, M, N, O, P Polyubiquitin-B 9606
235 3I3T 2 B, D, F, H Ubiquitin 9606
236 5FER 3 C, F Ubiquitin-40S ribosomal protein S27a 9913
237 5IBK 3 C, F Polyubiquitin-B UNP residues 75-150 9606
238 5OHK 2 B Polyubiquitin-B 9606
239 1CMX 2 B, D PROTEIN (UBIQUITIN YUH1-UBAL) UBIQUITIN C-TERMINUS MODIFIED TO AN ALDEHYDE ALL 9606 3.1.2.15 | Details
240 3OJ3 1 A, B, C, D, E, F, G, H Ubiquitin Ubiquitin, UNP residues 1-76 9606
241 5N38 2 B Polyubiquitin-B Ser65 is phosphorylated 9606
242 4HCP 2 B NEDD8 unp residues 1-76 9606
243 3O65 2 B, D, F, H Ubiquitin 9606
244 5CRA 2 C, D Polyubiquitin-B UNP residues 1-75 9606
245 5V69 2 B ME.4 9606
246 5U4P 3 C Ubiquitin-40S ribosomal protein S31 4932
247 5L6I 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
248 5XPK 1 A Ubiquitin 9606
249 5XPK 2 B D-ubiquitin 9606
250 5XDP 1 B D-ubiquitin 9606
251 5XDP 2 A ubiquitin-B K11/48-branched teraubiquitin 9606
252 5O76 3 E, F UbV.pCBL ubiquitin variant 9606
253 5D0K 3 B, E, H, K Polyubiquitin-B UNP residues 1-76 9606
254 5OHV 1 A, C Ubiquitin 9606
255 5KNL 2 B, E Ubiquitin 84753
256 4I6L 2 B Ubiquitin UNP residues 77-150 9606
257 5TUT 2 B Ubiquitin 9606
258 3OLM 2 D Ubiquitin 4932
259 3CMM 2 B, D Ubiquitin 559292
260 4MDK 2 E, F, G, H Ubiquitin UNP residues 76-152 9606
261 5N2W 2 B Polyubiquitin-B Ser65 is phosphorylated to give SEP65 9606
262 4MM3 1 A Ubiquitin UNP residues 1-76 9606
263 2FIF 1 A, C, E Ubiquitin 9913
264 5JQS 2 D Ubiquitin-40S ribosomal protein S27a 9913
265 2XBB 2 C, D UBIQUITIN 9913
266 2GMI 3 C Ubiquitin 9606
267 4HCN 2 B Polyubiquitin unp RESIDUES 1-76 4932
268 5J26 1 B Ubiquitin Variant i53 9606
269 3DVG 3 X Ubiquitin D77 9606
270 3DVG 4 Y Ubiquitin 9606
271 1WR6 2 E, F, G, H ubiquitin 9913
272 3LDZ 1 E, F, G Ubiquitin 9913
273 3PTF 2 C, D Polyubiquitin-B Ubiquitin 9606
274 3RUL 1 A, B, C, D Ubiquitin 9606
275 5BNB 2 E, F, G, I Polyubiquitin-B 9606
276 5LRX 2 B, D Polyubiquitin-B Gly76 was replaced with propargylamide 9606
277 5CAW 2 B, D Polyubiquitin-B phosphorylated at Ser65 Gly76 exchanged with chemical probe, bromopropylamine. The bromide was lost during the coupling. 9606
278 4XOK 1 A, B, C Ubiquitin 9606
279 3MTN 2 B, D UBIQUITIN VARIANT UBV.21.4 9606
280 5V6A 2 B ME.2 9606
281 5LRV 2 B Polyubiquitin-B Lys11 was replaced with a diaminobutyric acid (DAB) residue 9606
282 5LRV 3 C Polyubiquitin-B Gly76 was replaced with a ligation handle for diubiquitin probe generation 9606
283 3DVN 3 U, X Ubiquitin D77 9606
284 3DVN 4 V, Y Ubiquitin 9606
285 5L8W 3 C Polyubiquitin-B Recombinant expression followed by chemical synthesis 9606
286 1F9J 1 A, B TETRAUBIQUITIN 9606
287 2FID 1 A Ubiquitin 9913
288 5OHP 2 B, C Polyubiquitin-B 9606
289 4HXD 1 A, C Polyubiquitin-C 9606 3.4.19.12 | Details
290 1YD8 1 U, V UBIQUIN 9913
291 4BOZ 2 B, C, E UBIQUITIN-C 9606
292 5HPT 2 B, E, H Ubiquitin variant P2.3 9606
293 3WXG 2 B, E Ubiquitin 10090
294 3WXG 3 C, F Ubiquitin UNP residues 1-72 10090
295 4XKH 1 A, B, D, F, G, I Polyubiquitin-C UNP RESIDUES 77-152 9913
296 3IHP 2 C, D Ubiquitin 9606
297 5LN1 2 U Polyubiquitin-B 9606
298 3K9P 2 B Ubiquitin 9606
299 3DBH 3 I, J, K, L NEDD8 9606
300 4BVU 3 C UBIQUITIN OXYESTER LINK BETWEEN G76 AND UBCH5C S85 9606
301 5CVN 3 D Polyubiquitin-B UNP residues 1-76 9606
302 3JSV 1 A Ubiquitin 9606
303 3JSV 2 B Ubiquitin 9606
304 3DBL 3 I, J, K, L NEDD8 9606
305 3TBL 2 D, E Ubiquitin 9606
306 2HTH 1 A Ubiquitin 9606
307 3KW5 2 B Ubiquitin 9606
308 6EQI 1 A Ubiquitin 9606
309 5E6J 2 B, E ubiquitin 32630
310 5E6J 3 C, F Polyubiquitin-B 32630
311 2NVU 4 I, J NEDD8 9606
312 2XK5 1 A UBIQUITIN 9606
313 2XK5 2 B UBIQUITIN 9606
314 4JQW 2 C Polyubiquitin-C Ubiquitin 9606
315 4RF0 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
316 3KVF 2 B Ubiquitin 9606
317 5AF6 1 A, B, C, D, E UBIQUITIN ISOPEPTIDE BONDS ACROSS BETWEEN CHAINS, A76 C AND D33 NZ, B76 C AND A33 NZ, C76C AND B33 NZ, E76 C AND C33 NZ. ISOPEPTIDE BOND ACROSS THE ASU FOR, D76 C AND E33 NZ SYMM 9606
318 3H1U 1 A, B Ubiquitin 9913
319 5JTJ 2 B Polyubiquitin-B 9606
320 2WX1 1 A, B UBIQUITIN 9913
321 4WUR 2 B Polyubiquitin-B UNP residues 1-76 9606
322 4II3 2 B, D Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
323 5C7J 2 C, D Polyubiquitin-C UNP residues 1-74 9606
324 4S1Z 1 A, B, C, D, E Ubiquitin residues 1-76 9606
325 4XOL 1 A, B Ubiquitin 9606
326 5JP3 2 B, D, F, H Polyubiquitin-B 9606
327 4P4H 3 S, T, U, W, X Ubiquitin-60S ribosomal protein L40 9606
328 3GZN 3 I, J NEDD8 9606
329 5O44 1 A, E Ubiquitin 7370
330 5O44 2 B, C Polyubiquitin-B 9606
331 5O44 3 D, F Polyubiquitin-B 9606
332 3PHD 2 E, F, G, H Polyubiquitin 9606
333 3DBR 3 I, J, K, L NEDD8 9606
334 3N30 1 A, B Ubiquitin 9606
335 4P5O 5 H, K NEDD8 9606
336 3ZLZ 1 A, B UBIQUITIN TRI-UBIQUITIN CHAIN LINKED VIA LYS6. K48R IN BOTH MOLECULES. ISOPEPTIDE LINKAGES ARE NOT RESOLVED. 9606
337 3JVZ 3 X, Y Ubiquitin 9606
338 4DHZ 2 B Ubiquitin aldehyde 9606
339 4DHZ 3 E Ubiquitin 9606
340 3DQV 1 A, B NEDD8 NEDD8 C-terminus covalently linked to Cul5 Lys724 9606
341 5UDH 3 E Ubiquitin C variant Hexa-his N-terminal tagged protein UNP residues 17-92 9606
342 5AIT 3 C, F POLYUBIQUITIN-C UNP RESIDUES 1-76 9913
343 5O6S 1 A, B, C, D, E, F Polyubiquitin-B Variant of ubiquitin identified from phage-display 9606
344 3VFK 1 A ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala 9606
345 5C7M 2 B, C Polyubiquitin-C UNP residues 1-75 9606
346 1R4M 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
347 3JW0 3 X, Y Ubiquitin 9606
348 4LCD 3 E, F Ubiquitin UNP residues 1-75 9606
349 4DDG 2 D, E, F, G, H, I, M, N, O, P, Q, R Polyubiquitin-C 9606
350 5JTV 2 B, D, F, H Polyubiquitin-B 9606
351 5OHN 2 B, D Polyubiquitin-B 9606
352 5TTE 3 F ubiquitin unp residues 1-76 4565
353 2FCQ 1 A, B Ubiquitin residues 1-76 9031
354 3EEC 1 A, B Ubiquitin 9606
355 5VNZ 3 C, F Ubiquitin 9606
356 4NQK 2 E, F, G, H, I, J Ubiquitin UNP residues 76-152 9606
357 4DDI 2 D, E, F, G, H, I Polyubiquitin-C 9606
358 5H7S 1 E, F Ubiquitin-like 1 9606
359 5EDV 3 E, F, G, H Polyubiquitin-B UNP residues 1-76 9606
360 5CVO 3 C, F Polyubiquitin-B UNP residues 1-76 9606
361 4UF6 2 B, E, H, K POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH- L5 9606
362 5OHM 1 A, C, E, G, I, K Polyubiquitin-C 9598
363 4ZUX 10 X, c, h, m Polyubiquitin-B 9606
364 2DX5 2 B Ubiquitin 9913
365 3OJ4 2 B, E Ubiquitin Ubiquitin, UNP residues 1-76 9606
366 1R4N 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
367 5VO0 3 C, F Ubiquitin 9606
368 2AYO 2 B Ubiquitin 9606
369 5KHY 1 A Polyubiquitin-B 9606
370 5KHY 2 B Polyubiquitin-B 9606
371 4JIO 2 U Ubiquitin 9606
372 4WHV 3 A, F, G, L Polyubiquitin-B unp residues 1-76 9606
373 5XK4 1 A Polyubiquitin-B UNP residues 1-76 9606
374 5XK5 1 A Polyubiquitin-B UNP residues 1-76 9606
375 5VEY 2 B Polyubiquitin-B 9606
376 5VF0 1 A Polyubiquitin-B 9606
377 5XBO 1 A Polyubiquitin-B UNP residues 1-76 9606
378 5UJL 1 A, B Ubiquitin residues 1-76 9606
379 5GJQ 34 y Polyubiquitin-B UNP RESIDUES 1-76 9606
380 5KGF 8 M, O Ubiquitin 9606
381 2NBD 1 A entity 9606
382 2NBE 1 A entity 9606
383 2N7K 1 A NEDD8 9606
384 5A5B 9 9 UBIQUITIN ALDEHYDE 9606
385 2N3U 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
386 2N3V 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
387 2N3W 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
388 2N2K 1 A ubiquitin 9606
389 2N2K 2 B ubiquitin 9606
390 2N13 2 B Ubiquitin 9606
391 2N13 3 C Ubiquitin 9606
392 2MWS 1 A Ubiquitin UNP residues 1-76 9606
393 2MUR 2 B Ubiquitin 9606
394 2MSG 1 A Ubiquitin UNP residuse 1-72 9606
395 2MRO 1 A Polyubiquitin-B Human Ubiquitin 9606
396 2MRE 1 A Polyubiquitin-C unp residues 1-76 9606
397 2MOR 1 A Ubiquitin UNP residues 1-76 9606
398 2MJB 1 A Ubiquitin-60S ribosomal protein L40 Ubiquitin-like 3 domain 9606
399 2MJ5 1 A Polyubiquitin-C UNP residuses 1-76 9606
400 2MI8 1 A Ubiquitin 9606
401 2RU6 1 A Ubiquitin 9606
402 2MCN 2 B Ubiquitin UNP residues 1-76 9606
403 2MBQ 1 A, B Ubiquitin UNP residues 1-76 9606
404 2MBO 1 A, B Ubiquitin UNP residues 1-76 9606
405 2MBH 2 A Ubiquitin 9606
406 2MBB 2 B Polyubiquitin-B UNP P0CG47 residues 1-76 9606
407 2M0X 1 A engineered ubiquitin variant 9606
408 2LZ6 1 A Ubiquitin 9606
409 2LVO 1 A Ubiquitin 9606
410 2LVP 1 A, B Ubiquitin 9606
411 2LVQ 1 A, B Ubiquitin 9606
412 2RSU 1 A Ubiquitin 9606
413 2LJ5 1 A Ubiquitin 9606
414 2LD9 1 A Ubiquitin 9606
415 2L3Z 1 A Ubiquitin UNP Residues 1-76 9606
416 2L0T 1 A Ubiquitin 9606
417 2L0F 1 A Ubiquitin 9606
418 2L00 2 B Ubiquitin ubiquitin core domain 4932
419 2RR9 1 A, B ubiquitin 9606
420 2KX0 1 A ubiquitin B 9606
421 2KWV 2 B Ubiquitin 9606
422 2KWU 2 B Ubiquitin 9606
423 2KTF 1 A Ubiquitin 9606
424 2KOX 1 A Ubiquitin 9606
425 2KO3 1 A NEDD8 9606
426 2KN5 1 A Ubiquitin 9606
427 2KLG 1 A Ubiquitin 9606
428 2KJH 2 B Ubiquitin 9606
429 2KHW 2 B Ubiquitin 9606
430 2KDE 2 B, C Ubiquitin 8355
431 2KDF 2 B, C Ubiquitin 9606
432 2K8B 1 A Ubiquitin 9606
433 2K8C 1 A Ubiquitin 9606
434 2K6D 2 B Ubiquitin ubiquitin 9606
435 2K39 1 A Ubiquitin 8355
436 2K25 1 A UBB 9606
437 2JZZ 1 A Ubiquitin 9606
438 2JY6 1 A Ubiquitin protein 9606
439 2JWZ 1 A Ubiquitin 4932
440 2JVC 1 A ubiquitin_like protein
441 2JT4 2 B Ubiquitin SH3 domain sequence database residues 350-420 4932
442 2Z59 2 B Ubiquitin 9606
443 2JRI 2 B, C UBC protein sequence database residues 318-469 9606
444 2PE9 1 A, B Ubiquitin 9606
445 2PEA 1 A, B Ubiquitin 9606
446 2NR2 1 A Ubiquitin 9606
447 2G3Q 2 B Ubiquitin 4932
448 2DEN 2 B Ubiquitin 9606
449 2FUH 2 B Ubiquitin Ubiquitin 10116
450 1ZW7 1 A Ubiquitin 4932
451 1ZGU 2 B Ubiquitin 9606
452 1YX5 2 B Ubiquitin Sequence Database Residues 1-76 9606
453 1YX6 2 B Ubiquitin Sequence Database Residues 1-76 9606
454 2BGF 1 A, B DI-UBIQUITIN ISOPEPTIDE BOND BETWEEN GLY76A AND LYS48B 9606
455 1XQQ 1 A ubiquitin 9606
456 1WR1 1 A Ubiquitin 4932
457 1V80 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
458 1V81 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
459 1Q5W 2 B Ubiquitin 9606
460 1Q0W 2 B Ubiquitin 4932
461 1OTR 2 B Ubiquitin 4932
462 1G6J 1 A UBIQUITIN 9606
463 1FXT 2 B UBIQUITIN 9606
464 1D3Z 1 A PROTEIN (UBIQUITIN) 9606
465 1C3T 1 A PROTEIN (1D8 UBIQUITIN) 9606
466 1UD7 1 A PROTEIN (UBIQUITIN CORE MUTANT 1D7) 9606
467 1BT0 1 A PROTEIN (UBIQUITIN-LIKE PROTEIN 7, RUB1) 3702