Sequence Similarity Clusters for the Entities in PDB 3VHT

Entity #1 | Chains: A
Green fluorescent protein protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50197
95 % 228 254 69 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 241 294 37
70 % 246 300 33
50 % 247 302 79
40 % 257 315 96
30 % 439 530 15
Entity #2 | Chains: B
Green fluorescent protein,ATPase WRNIP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50198
95 % 1 1 41527
90 % 3 4 13425
70 % 3 4 12587
50 % 3 4 11194
40 % 3 4 10057
30 % 3 4 8120
Entity #3 | Chains: C
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 182 407 4
95 % 193 431 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 202 444 6
70 % 215 477 8
50 % 221 498 10
40 % 233 524 15
30 % 285 691 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5TOG 1 A Polyubiquitin-B 9606
2 5NVG 1 A Polyubiquitin-B 9606
3 5TOF 1 A Polyubiquitin-B 9606
4 4XOF 1 A Ubiquitin 9606
5 3A9J 1 A Ubiquitin 10090
6 3A9J 2 B Ubiquitin 10090
7 5GOB 1 A Ubiquitin 9606
8 5GOB 2 B D-ubiquitin 9606
9 5W46 1 A, B Polyubiquitin-B 9606
10 5GOD 1 A, B Ubiquitin 9606
11 5GOD 2 C, D D-ubiquitin 9606
12 5XVE 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
13 3NHE 2 B Ubiquitin 9606
14 5DK8 1 A, B Polyubiquitin-B Ubiquitin, UNP residues 2-75 9606
15 1YJ1 1 A, B, C Ubiquitin residues 1-76
16 5NL4 1 A, B, C Polyubiquitin-C 9606
17 5V1Y 2 C, D Ubiquitin 9606
18 4M0W 2 B Ubiquitin 9913
19 4Y1H 1 A Ubiquitin-40S ribosomal protein S27a K33 linked tri-Ubiquitin. 9913
20 2GBJ 1 A, B Ubiquitin 9606
21 1YIW 1 A, B, C Ubiquitin 9031
22 1OGW 1 A UBIQUITIN LEF IS (4S)-5-FLUORO-L-LEUCINE RESIDUES 1-76 9606
23 2WWZ 1 A, B UBIQUITIN 9913
24 5KYC 2 C Polyubiquitin-B UNP residues 1-76 9606
25 4IUM 2 B Ubiquitin UNP residues 1-75 9606
26 3PLU 1 A, B Ubiquitin-like modifier HUB1 4932
27 4GU2 1 A Ubiquitin 5759
28 3A9K 1 A Ubiquitin 10090
29 3A9K 2 B Ubiquitin 10090
30 4HK2 1 A, B, C, D Ubiquitin 9606
31 5KYF 2 C Polyubiquitin-B UNP residues 1-76 9606
32 1XD3 2 B, D UBC protein 9606
33 5NLF 1 A, B, C Polyubiquitin-C 9606
34 5V5H 2 B Ubiquitin variant CC.2 32630
35 4ZPZ 1 A, B Polyubiquitin-B ubiquitin, UNP residues 1-73 9606
36 4UN2 1 A UBIQUITIN 9606
37 5VBT 1 A, B UBH04 32630
38 4PIH 1 A, B Ubiquitin 9606
39 2ZCC 1 A, B, C Ubiquitin 9913
40 4PIJ 1 A, B Ubiquitin 9606
41 5NLI 1 A, B, C Polyubiquitin-C 9606
42 5O6T 2 C, D Polyubiquitin-B A variant of ubiquitin identified from a phage-display library 9606
43 5YT6 1 A, C, E, G Ubiquitin 9606
44 4V3L 2 B, D POLYUBIQUITIN-C G76 IN CHAIN B IS COVALENTLY LINKED TO K85 SIDE CHAIN IN CHAIN A. RESIDUES 77-152 9606
45 4LJO 2 B Polyubiquitin-C unp residues 77-152 9913
46 4FBJ 2 B NEDD8 9606
47 3BY4 2 B Ubiquitin 9606
48 5K9P 1 A Polyubiquitin-B 9606
49 5NLJ 1 A, B, C Polyubiquitin-B 9606
50 5KYD 1 D Polyubiquitin-B UNP residues 1-76 9606
51 4XYZ 1 A, B Polyubiquitin-C UNP residues 77-152 9913
52 3M3J 1 A, B, C, D, E, F Ubiquitin 9913
53 2ZNV 2 B, E Ubiquitin 10090
54 2ZNV 3 C, F Ubiquitin 10090
55 2GBM 1 A, B, C, D Ubiquitin 9606
56 5OXH 1 A Ubiquitin T66V/L67N mutant 9606
57 5EMZ 1 A, C, E Polyubiquitin-B 9606
58 5EMZ 2 B, D, F Polyubiquitin-B 9606
59 6B7M 2 B, C Polyubiquitin-C 9606
60 3VUX 1 A, B, C Polyubiquitin-C Ubiquitin 9606
61 2GBN 1 A Ubiquitin 9606
62 2ZCB 1 A, B, C Ubiquitin 9606
63 5OXI 1 A, B Ubiquitin L67S mutant 9606
64 4K1R 2 B, D Polyubiquitin-C 9606
65 3PRP 2 B, D Ubiquitin 9606 3.4.19.12 | Details
66 4I6N 2 B, D Ubiquitin 9606
67 3V6C 2 B Ubiquitin 9606
68 5AF5 1 A POLYUBIQUITIN-C 9606
69 5J8P 1 A ubiquitin 9606
70 5J8P 2 B D-ubiquitin 9606
71 1NDD 1 A, B, C, D PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8) HUMAN NEDD8 UBIQUITIN-LIKE PROTEIN MONOMER WITH 4 MOLECULES IN THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT 9606
72 4K7U 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
73 6EI1 2 B Polyubiquitin-B 9606
74 6FGE 2 C Polyubiquitin-B 9606
75 2J7Q 2 B, D UBIQUITIN THE C-TERMINAL GLY 76 IS REPLACED BY THE VINYLMETHYLESTER MOIETY UBIQUITIN FUSED TO VINYLMETHYLESTER, UBVME, RESIDUES 1-75 9606
76 3NS8 1 A, B Ubiquitin 9606
77 5GOJ 1 A Ubiquitin 9606
78 5GOJ 2 B D-ubiquitin 9606
79 1UBI 1 A UBIQUITIN 9606
80 2D3G 1 A, B ubiquitin 9913
81 5GOC 1 A Ubiquitin 9606
82 5GOC 2 D D-ubiquitin 9606
83 5X3N 1 A Polyubiquitin-B UNP residues 1-76 9606
84 5XIU 2 B Ubiquitin-40S ribosomal protein S27a 10090
85 5TXK 2 B Polyubiquitin-B 9606
86 1UBQ 1 A UBIQUITIN 9606
87 6B7O 2 B, C Polyubiquitin-C 9606
88 4ZFR 2 B ubiquitin unp residues 77-152 9606
89 4MSM 2 B, D Ubiquitin UNP residues 77-152 9606
90 4HJK 1 A Ubiquitin UNP residues 87-162 9606
91 6GLC 2 B Polyubiquitin-B 9606
92 3N32 1 A Ubiquitin 9606
93 5L8H 2 B Polyubiquitin-B Recombinant expression followed by chemical synthesis. 9606
94 3ONS 1 A Ubiquitin 9606
95 5XU8 2 B Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9913
96 4DWF 1 A, B HLA-B-associated transcript 3 9606
97 3MHS 4 D Ubiquitin 9606
98 5M93 1 A, B, C Polyubiquitin-B 9606
99 3K9O 2 B Ubiquitin 9606
100 4K7W 1 A, B, C ubiquitin UNP residues 1-76 9606 6.3.2.19 | Details
101 2HD5 2 B Polyubiquitin residues 1-76 9913
102 5NMC 1 A, B, C Polyubiquitin-C 9606
103 5GOI 1 A, B Ubiquitin 9606
104 5GOI 2 C, D D-ubiquitin 9606
105 1WRD 2 B Ubiquitin 9913
106 5GVI 2 B ubiquitin 10090
107 5GVI 3 C ubiquitin 10090
108 4K7S 1 A, B, C ubiquitin UNP residues 1-73 9606 6.3.2.19 | Details
109 2BKR 2 B NEDDYLIN 9606
110 5CVM 2 B Polyubiquitin-B UNP residues 1-76 9606
111 2FCS 1 A, B Ubiquitin residues 1-76
112 4Q5E 2 B Polyubiquitin 4932 6.3.2.19 | Details
113 5V1Z 2 C, D Ubiquitin 9606
114 3ALB 1 A, B, C, D ubiquitin 9606
115 5D0M 3 B Polyubiquitin-B UNP residues 1-76 9606
116 5XIS 2 B, E Ubiquitin-40S ribosomal protein S27a 10090
117 5XIS 3 C, F Ubiquitin-40S ribosomal protein S27a 10090
118 4PIG 1 A, B, C, D Ubiquitin 9606
119 5X3M 1 A Polyubiquitin-B 9606
120 5X3M 2 D D-ubiquitin D-Ub-S65E-NH2 9606
121 4H2W 2 C, D Aminoacyl carrier protein 1176649
122 5NL5 1 A, B, C Polyubiquitin-B 9606
123 4MSQ 2 B, D Ubiquitin UNP residues 77-152 9606
124 4LDT 2 B Ubiquitin aldehyde 9606
125 4LDT 4 D Ubiquitin 9606
126 3VUW 1 A, B, C Polyubiquitin-C Ubiquitin 9606
127 3TMP 2 B, D, F, H Polyubiquitin-C Ubiquitin-like 1 9606
128 2QHO 1 A, C, E, G Ubiquitin 9913
129 3H7P 1 A Ubiquitin 9606
130 3H7P 2 B Ubiquitin 9606
131 4WZP 1 A, B, C, D, E, F, G, H ubiquitin phosphorylation at Ser65 UNP residues 1-76 9606
132 3EHV 1 A, B, C Ubiquitin 9606 6.3.2.19 | Details
133 5GO7 1 A Ubiquitin 9606
134 5GO7 2 B D-ubiquitin 9606
135 1P3Q 2 U, V Ubiquitin 9913
136 2OOB 2 B Ubiquitin 9913
137 5ULF 2 B, D Ubiquitin 9606
138 5KYE 2 C, D Polyubiquitin-B UNP residues 1-76 9606
139 4F8C 2 B, D NEDD8 9606
140 3PLV 1 A Ubiquitin-like modifier HUB1 4932
141 5ULH 2 B Ubiquitin 9606
142 3HM3 1 A, B, C, D Ubiquitin 9606
143 5LRW 2 B, D Polyubiquitin-B Gly76 was replaced with 2-bromoethylamine 9606
144 5GOK 1 A Ubiquitin 9606
145 5GOK 2 B D-ubiquitin 9606
146 4H2V 2 C, D Aminoacyl carrier protein 1 1355477
147 4WLR 3 C Polyubiquitin-B 9606
148 3WWQ 1 A, D, G, J Ubiquitin 10090
149 3WWQ 2 B, E, H, K Ubiquitin 10090
150 1YQB 1 A Ubiquilin 3 Ubiquitin-like domain, residues 19-99 9606
151 5JG6 2 B, C Polyubiquitin-B 9606
152 3EFU 1 A Ubiquitin 9606
153 4Q5H 2 B Polyubiquitin 4932 6.3.2.19 | Details
154 5AF4 1 A, B, C, D, E, F, G, H UBIQUITIN ISOPEPTIDE LINKAGES BETWEEN A76 C AND B33 NZ, C76 C AND D33 NZ, E76 C AND F33 NZ 9606
155 4V3K 2 B, E POLYUBIQUITIN-C LYS85 IN CHAINS A AND D IS COVALENTLY LINKED TO GLY76 IN CHAINS B AND E, RESPECTIVELY. RESIDUES 77-152 9606
156 4IG7 2 B Ubiquitin 9606
157 2JF5 1 A, B UBIQUITIN ISO-PEPTIDE LINK BETWEEN A-LYS63 AND B-GLY76 9606
158 5MN9 1 A, B Ubiquitin-40S ribosomal protein S27a 9913
159 5WVO 1 A, B Ubiquitin 9606
160 3V6E 2 B Ubiquitin 9606
161 1UZX 2 B UBIQUITIN 9913
162 5YDR 1 A, D Polyubiquitin-B UNP residues 1-73 9606
163 4H2U 2 C, D Aminoacyl carrier protein 1 1355477
164 5V5G 2 B, D Ubiquitin variant CC.4 32630
165 4H2Y 2 C, D Aminoacyl carrier protein 1176649
166 4H2X 3 C, D Aminoacyl carrier protein 1176649
167 1S1Q 2 B, D ubiquitin 9606
168 4H2S 2 C, D Aminoacyl carrier protein 1 1355477
169 4LJP 2 B Polyubiquitin-C unp residues 77-152 9913
170 3VUY 1 A, B, C Polyubiquitin-C Ubiquitin 9606
171 3PHW 2 B, D, F, H Ubiquitin-40S ribosomal protein S27a UNP residues 1-75 9606
172 4PQT 2 B Protein UBBP4 unp residues 77-152 9606
173 5BZ0 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin from bovine erythrocytes 9913
174 2GBR 1 A, B, C Ubiquitin 9606
175 2FAZ 1 A, B Ubiquitin-like containing PHD and RING finger domains protein 1 UBIQUITIN-LIKE DOMAIN 9606 2.3.2.27 | Details
176 4XKL 1 A, C Ubiquitin 9606
177 4FJV 2 B, D Polyubiquitin-C 9606
178 5DFL 1 B Ubiquitin 9606
179 2C7N 2 B, D, F, H, J, L UBIQUITIN 9913
180 5HPS 2 B Ubiquitin variant P1.1 9606
181 5GOH 1 A Ubiquitin 9606
182 5GOH 2 D D-ubiquitin 9606
183 3ZNI 4 D, H, L, P POLYUBIQUITIN-C CARBONYL CARBON OF G76 IN CHIANS D, H, L AND P FORMS AN ISOPEPTIDE LINKAGE WITH THE SIDECHAIN OF K85 IN CHAINS C, G, K AND O, RESPECTIVELY. GSGGS LINKER AT THE N- TERMINUS OF PROTEIN RESULTED FROM CLONING RESIDUES 77-152 9606
184 2G45 2 B, E Ubiquitin 9606
185 6AQR 4 D Polyubiquitin-C 9606
186 5MNJ 2 B, F Polyubiquitin-B gsggs linker at the N-terminus resulted from cloning. G76 in chain B is covalently linked to K85 side chain in Chain A. 9606
187 5ZQ3 2 C, D Ubiquitin 9606
188 5ZQ4 2 C, D ubiquitin 9606
189 4GSW 1 A, B Ubiquitin 5759
190 4RF1 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
191 1SIF 1 A ubiquitin 9606
192 5JBY 1 A, C, E ubiquitin 9606
193 5JBY 2 B, D, F D-ubiquitin 9606
194 5IFR 2 B Polyubiquitin-B 9606
195 2IBI 2 B Ubiquitin 9606
196 5L6H 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
197 5GOG 1 A Ubiquitin 9606
198 5GOG 2 B D-ubiquitin 9606
199 2GBK 1 A, B, C, D Ubiquitin 9606
200 4AUQ 3 C, F POLYUBIQUITIN-C UBIQUITIN, RESIDUES 1-76 9606
201 4NNJ 2 B, D, E Uba1 UNP residues 1-76 4932
202 4Z9S 1 A, B, C, D Ubiquitin-40S ribosomal protein S27a UNP RESIDUES 1-76 9913
203 2XEW 1 A, B, C, D, E, F, G, H, I, J, K, L UBIQUITIN UBIQUITIN POLYMER LINKED THROUGH LYS11 IN AN ISOPEPTIDE LINKAGE 9606
204 2WDT 2 B, D UBIQUITIN C-TERMINAL GLY76 OF WILDTYPE UBIQUITIN IS REPLACED BY A VINYL METHYLESTER MOIETY (UBVME) RESIDUES 1-75 9606
205 1XT9 2 B Neddylin 9606
206 1AAR 1 A, B DI-UBIQUITIN 9913
207 4AP4 3 C, F UBIQUITIN C ISOPEPTIDE AMIDE LINKED TO UBCH5A (CHAIN B AND CHAIN E) RESIDUES 76-152 9606
208 4UEL 2 B POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH-L5 9606
209 4II2 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
210 4ZFT 2 B, D Polyubiquitin-B unp residues 77-152 9606
211 2WX0 1 A, B, E, F UBIQUITIN 9913
212 3A1Q 1 A, D Ubiquitin 10090
213 3A1Q 2 B, E Ubiquitin 10090
214 5HPL 2 C, D Ubiquitin variant R5.4 9606
215 5TR4 2 B, D Ubiquitin 9913
216 4BOS 2 C, E POLYUBIQUITIN-C RESIDUES 1-76 9606
217 3H7S 1 A, B Ubiquitin 9606
218 3C0R 2 B, D Ubiquitin 9606
219 5AIU 3 C, F POLYUBIQUITIN-C CHAIN B COVALENTLY LINKED TO CHAINS C, CHAIN E IS COVALENTLY LINKED TO CHAIN F UNP RESIDUES 1-76 9606
220 4S22 1 A, B, C, D Ubiquitin residues 77-152 9913
221 2C7M 2 B UBIQUITIN 9913
222 1TBE 1 A, B TETRAUBIQUITIN 9606
223 3PT2 2 B Ubiquitin B 9606
224 4H2T 2 C, D Aminoacyl carrier protein 1 1355477
225 5VZW 2 C, D Ubiquitin 9606
226 5V5I 2 B, D Ubiquitin variant CC.1 32630
227 3PRM 2 B, D Ubiquitin 9606 3.4.19.12 | Details
228 4R62 2 B Ubiquitin-40S ribosomal protein S27a Ubiquitin 9606
229 5EYA 3 C, D Polyubiquitin-B UNP residues 1-76 9606
230 5GO8 1 A ubiquitin 9606
231 5GO8 2 B D-ubiquitin 9606
232 3A33 2 B Ubiquitin 9606
233 3VHT 3 C Ubiquitin 10090
234 5XIT 1 D, F Ubiquitin-40S ribosomal protein S27a 10090
235 5XIT 3 B, H Ubiquitin-40S ribosomal protein S27a 10090
236 6ASR 1 A, C Ubiquitin residues 1-76 9606
237 2FCN 1 A, B Ubiquitin residues 1-76
238 4DHJ 2 B, F, J, M Ubiquitin aldehyde 9606
239 4DHJ 3 D, H Ubiquitin 9606
240 3ZNH 2 B POLYUBIQUITIN-B GLY76 IS REPLACED WITH A PROPARGYL GROUP 9606
241 4BBN 2 C POLYUBIQUITIN-B RESIDUES 1-76 9913
242 4BBN 3 F POLYUBIQUITIN-B RESIDUES 229-304 9913
243 4NQL 2 B Ubiquitin 10090
244 4NQL 3 C Ubiquitin 10090
245 1NBF 2 C, D Ubiquitin aldehyde 9606
246 2O6V 1 A, C, E, G Ubiquitin 9606
247 2O6V 2 B, F Ubiquitin 9606
248 2O6V 3 D, H Ubiquitin 9606
249 3OFI 2 C, D Ubiquitin 9606
250 3AUL 1 A, B Polyubiquitin-C Ubiquitin 9606
251 3UGB 2 B Polyubiquitin-C unp residues 1-76 9606
252 5JBV 1 A Ubiquitin 9606
253 5JBV 2 B D-ubiquitin 9606
254 5X3O 1 A Polyubiquitin-B UNP residues 1-76 9606
255 5X3O 2 D D-ubiquitin 9606
256 5ULK 2 B Ubiquitin 9606
257 5ZQ5 2 B, D Ubiquitin 9606
258 6FX4 2 B, D Polyubiquitin-B 35525
259 3NOB 1 A, B, C, D, E, F, G, H Ubiquitin 9606
260 3IFW 2 B Ubiquitin 9606
261 3N3K 2 B Ubiquitin 9606
262 5GHA 2 E, F, G, H Sulfur Carrier TtuB G65C mutant 274
263 5UCL 1 A Polyubiquitin-B 9606
264 2FCM 1 A, B Ubiquitin residues 1-76
265 4KSK 2 C, D Polyubiquitin-C unp residues 76-152 9606
266 5L6J 2 B, D Ubiquitin-40S ribosomal protein S31 4932
267 5HPK 2 B Ubiquitin variant NL.1 9606
268 5OHL 2 I, J, K, L, M, N, O, P Polyubiquitin-B 9606
269 3I3T 2 B, D, F, H Ubiquitin 9606
270 5FER 3 C, F Ubiquitin-40S ribosomal protein S27a 9913
271 5IBK 3 C, F Polyubiquitin-B UNP residues 75-150 9606
272 5OHK 2 B Polyubiquitin-B 9606
273 1CMX 2 B, D PROTEIN (UBIQUITIN YUH1-UBAL) UBIQUITIN C-TERMINUS MODIFIED TO AN ALDEHYDE ALL 9606 3.1.2.15 | Details
274 3OJ3 1 A, B, C, D, E, F, G, H Ubiquitin Ubiquitin, UNP residues 1-76 9606
275 5N38 2 B Polyubiquitin-B Ser65 is phosphorylated 9606
276 4HCP 2 B NEDD8 unp residues 1-76 9606
277 3O65 2 B, D, F, H Ubiquitin 9606
278 5CRA 2 C, D Polyubiquitin-B UNP residues 1-75 9606
279 5V69 2 B ME.4 9606
280 5U4P 3 C Ubiquitin-40S ribosomal protein S31 4932
281 5L6I 2 B, D, E Ubiquitin-40S ribosomal protein S31 4932
282 5XPK 1 A Ubiquitin 9606
283 5XPK 2 B D-ubiquitin 9606
284 5XDP 1 B D-ubiquitin 9606
285 5XDP 2 A ubiquitin-B K11/48-branched teraubiquitin 9606
286 5O76 3 E, F UbV.pCBL ubiquitin variant 9606
287 5D0K 3 B, E, H, K Polyubiquitin-B UNP residues 1-76 9606
288 5OHV 1 A, C Ubiquitin 9606
289 5KNL 2 B, E Ubiquitin 84753
290 4I6L 2 B Ubiquitin UNP residues 77-150 9606
291 5TUT 2 B Ubiquitin 9606
292 3OLM 2 D Ubiquitin 4932
293 3CMM 2 B, D Ubiquitin 559292
294 4MDK 2 E, F, G, H Ubiquitin UNP residues 76-152 9606
295 5N2W 2 B Polyubiquitin-B Ser65 is phosphorylated to give SEP65 9606
296 4MM3 1 A Ubiquitin UNP residues 1-76 9606
297 2FIF 1 A, C, E Ubiquitin 9913
298 5JQS 2 D Ubiquitin-40S ribosomal protein S27a 9913
299 5YDK 2 B, E, H, K Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
300 5YDK 3 C, D, I, J Ubiquitin-40S ribosomal protein S27a UNP residues 1-76 9606
301 2XBB 2 C, D UBIQUITIN 9913
302 2GMI 3 C Ubiquitin 9606
303 4HCN 2 B Polyubiquitin unp RESIDUES 1-76 4932
304 5J26 1 B Ubiquitin Variant i53 9606
305 3DVG 3 X Ubiquitin D77 9606
306 3DVG 4 Y Ubiquitin 9606
307 1WR6 2 E, F, G, H ubiquitin 9913
308 3LDZ 1 E, F, G Ubiquitin 9913
309 3PTF 2 C, D Polyubiquitin-B Ubiquitin 9606
310 5ZQ7 2 B, D Ubiquitin 9606
311 3RUL 1 A, B, C, D Ubiquitin 9606
312 5BNB 2 E, F, G, I Polyubiquitin-B 9606
313 5LRX 2 B, D Polyubiquitin-B Gly76 was replaced with propargylamide 9606
314 5CAW 2 B, D Polyubiquitin-B phosphorylated at Ser65 Gly76 exchanged with chemical probe, bromopropylamine. The bromide was lost during the coupling. 9606
315 4XOK 1 A, B, C Ubiquitin 9606
316 3MTN 2 B, D UBIQUITIN VARIANT UBV.21.4 9606
317 5ZQ6 2 B, D Ubiquitin 9606
318 5V6A 2 B ME.2 9606
319 5LRV 2 B Polyubiquitin-B Lys11 was replaced with a diaminobutyric acid (DAB) residue 9606
320 5LRV 3 C Polyubiquitin-B Gly76 was replaced with a ligation handle for diubiquitin probe generation 9606
321 3DVN 3 U, X Ubiquitin D77 9606
322 3DVN 4 V, Y Ubiquitin 9606
323 5L8W 3 C Polyubiquitin-B Recombinant expression followed by chemical synthesis 9606
324 1F9J 1 A, B TETRAUBIQUITIN 9606
325 2FID 1 A Ubiquitin 9913
326 5OHP 2 B, C Polyubiquitin-B 9606
327 4HXD 1 A, C Polyubiquitin-C 9606 3.4.19.12 | Details
328 1YD8 1 U, V UBIQUIN 9913
329 4BOZ 2 B, C, E UBIQUITIN-C 9606
330 5HPT 2 B, E, H Ubiquitin variant P2.3 9606
331 3WXG 2 B, E Ubiquitin 10090
332 3WXG 3 C, F Ubiquitin UNP residues 1-72 10090
333 4XKH 1 A, B, D, F, G, I Polyubiquitin-C UNP RESIDUES 77-152 9913
334 3IHP 2 C, D Ubiquitin 9606
335 5LN1 2 U Polyubiquitin-B 9606
336 3K9P 2 B Ubiquitin 9606
337 3DBH 3 I, J, K, L NEDD8 9606
338 4BVU 3 C UBIQUITIN OXYESTER LINK BETWEEN G76 AND UBCH5C S85 9606
339 5CVN 3 D Polyubiquitin-B UNP residues 1-76 9606
340 3JSV 1 A Ubiquitin 9606
341 3JSV 2 B Ubiquitin 9606
342 3DBL 3 I, J, K, L NEDD8 9606
343 3TBL 2 D, E Ubiquitin 9606
344 2HTH 1 A Ubiquitin 9606
345 3KW5 2 B Ubiquitin 9606
346 6EQI 1 A Ubiquitin 9606
347 5E6J 2 B, E ubiquitin 32630
348 5E6J 3 C, F Polyubiquitin-B 32630
349 2NVU 4 I, J NEDD8 9606
350 2XK5 1 A UBIQUITIN 9606
351 2XK5 2 B UBIQUITIN 9606
352 4JQW 2 C Polyubiquitin-C Ubiquitin 9606
353 4RF0 2 B Ubiquitin-60S ribosomal protein L40 UNP residues 1-75 9606
354 3KVF 2 B Ubiquitin 9606
355 6FYH 2 B Ubiquitin 35525
356 5AF6 1 A, B, C, D, E UBIQUITIN ISOPEPTIDE BONDS ACROSS BETWEEN CHAINS, A76 C AND D33 NZ, B76 C AND A33 NZ, C76C AND B33 NZ, E76 C AND C33 NZ. ISOPEPTIDE BOND ACROSS THE ASU FOR, D76 C AND E33 NZ SYMM 9606
357 3H1U 1 A, B Ubiquitin 9913
358 5JTJ 2 B Polyubiquitin-B 9606
359 2WX1 1 A, B UBIQUITIN 9913
360 4WUR 2 B Polyubiquitin-B UNP residues 1-76 9606
361 4II3 2 B, D Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 4896
362 5C7J 2 C, D Polyubiquitin-C UNP residues 1-74 9606
363 4S1Z 1 A, B, C, D, E Ubiquitin residues 1-76 9606
364 4XOL 1 A, B Ubiquitin 9606
365 5JP3 2 B, D, F, H Polyubiquitin-B 9606
366 4P4H 3 S, T, U, W, X Ubiquitin-60S ribosomal protein L40 9606
367 3GZN 3 I, J NEDD8 9606
368 5O44 1 A, E Ubiquitin 7370
369 5O44 2 B, C Polyubiquitin-B 9606
370 5O44 3 D, F Polyubiquitin-B 9606
371 3PHD 2 E, F, G, H Polyubiquitin 9606
372 3DBR 3 I, J, K, L NEDD8 9606
373 5YIK 2 C, D, F ubiquitin UNP RESIDUES 1-76 9606
374 3N30 1 A, B Ubiquitin 9606
375 4P5O 5 H, K NEDD8 9606
376 3ZLZ 1 A, B UBIQUITIN TRI-UBIQUITIN CHAIN LINKED VIA LYS6. K48R IN BOTH MOLECULES. ISOPEPTIDE LINKAGES ARE NOT RESOLVED. 9606
377 3JVZ 3 X, Y Ubiquitin 9606
378 4DHZ 2 B Ubiquitin aldehyde 9606
379 4DHZ 3 E Ubiquitin 9606
380 5YIJ 2 C, D, G Ubiquitin UNP RESIDUES 1-76 9606
381 3DQV 1 A, B NEDD8 NEDD8 C-terminus covalently linked to Cul5 Lys724 9606
382 5UDH 3 E Ubiquitin C variant Hexa-his N-terminal tagged protein UNP residues 17-92 9606
383 5AIT 3 C, F POLYUBIQUITIN-C UNP RESIDUES 1-76 9913
384 5O6S 1 A, B, C, D, E, F Polyubiquitin-B Variant of ubiquitin identified from phage-display 9606
385 3VFK 1 A ubiquitin, C-terminal fused by Cys-Lys-D-Ala-D-Ala 9606
386 5C7M 2 B, C Polyubiquitin-C UNP residues 1-75 9606
387 1R4M 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
388 3JW0 3 X, Y Ubiquitin 9606
389 4LCD 3 E, F Ubiquitin UNP residues 1-75 9606
390 4DDG 2 D, E, F, G, H, I, M, N, O, P, Q, R Polyubiquitin-C 9606
391 5JTV 2 B, D, F, H Polyubiquitin-B 9606
392 5OHN 2 B, D Polyubiquitin-B 9606
393 5TTE 3 F ubiquitin unp residues 1-76 4565
394 2FCQ 1 A, B Ubiquitin residues 1-76 9031
395 3EEC 1 A, B Ubiquitin 9606
396 5VNZ 3 C, F Ubiquitin 9606
397 4NQK 2 E, F, G, H, I, J Ubiquitin UNP residues 76-152 9606
398 4DDI 2 D, E, F, G, H, I Polyubiquitin-C 9606
399 5H7S 1 E, F Ubiquitin-like 1 9606
400 5EDV 3 E, F, G, H Polyubiquitin-B UNP residues 1-76 9606
401 5CVO 3 C, F Polyubiquitin-B UNP residues 1-76 9606
402 4UF6 2 B, E, H, K POLYUBIQUITIN-B GLY76 OF UBIQUITIN IS REPLACED BY GLY-AYE THAT IS COVALENTLY LINKED TO THE ACTIVE SITE CYS88 OF UCH- L5 9606
403 5OHM 1 A, C, E, G, I, K Polyubiquitin-C 9598
404 4ZUX 10 X, c, h, m Polyubiquitin-B 9606
405 2DX5 2 B Ubiquitin 9913
406 3OJ4 2 B, E Ubiquitin Ubiquitin, UNP residues 1-76 9606
407 1R4N 3 I, J, K, L Ubiquitin-like protein NEDD8 9606
408 5VO0 3 C, F Ubiquitin 9606
409 6DJW 2 B Ubiquitin 9913
410 2AYO 2 B Ubiquitin 9606
411 5KHY 1 A Polyubiquitin-B 9606
412 5KHY 2 B Polyubiquitin-B 9606
413 6DJX 2 B Ubiquitin 9913
414 4JIO 2 U Ubiquitin 9606
415 4WHV 3 A, F, G, L Polyubiquitin-B unp residues 1-76 9606
416 5VZM 1 A Ubiquitin UNP residues 1-76 9606
417 5XK4 1 A Polyubiquitin-B UNP residues 1-76 9606
418 5XK5 1 A Polyubiquitin-B UNP residues 1-76 9606
419 5VEY 2 B Polyubiquitin-B 9606
420 5VF0 1 A Polyubiquitin-B 9606
421 5XBO 1 A Polyubiquitin-B UNP residues 1-76 9606
422 5UJL 1 A, B Ubiquitin residues 1-76 9606
423 5GO0 1 A Ubiquitin, putative 5691
424 5GJQ 34 y Polyubiquitin-B UNP RESIDUES 1-76 9606
425 5KGF 8 M, O Ubiquitin 9606
426 2NBD 1 A entity 9606
427 2NBE 1 A entity 9606
428 2N7K 1 A NEDD8 9606
429 5A5B 9 9 UBIQUITIN ALDEHYDE 9606
430 2N3U 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
431 2N3V 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
432 2N3W 2 B, C Ubiquitin-60S ribosomal protein L40 UNP residues 1-76 9606
433 2N2K 1 A ubiquitin 9606
434 2N2K 2 B ubiquitin 9606
435 2N13 2 B Ubiquitin 9606
436 2N13 3 C Ubiquitin 9606
437 2MWS 1 A Ubiquitin UNP residues 1-76 9606
438 2MUR 2 B Ubiquitin 9606
439 2MSG 1 A Ubiquitin UNP residuse 1-72 9606
440 2MRO 1 A Polyubiquitin-B Human Ubiquitin 9606
441 2MRE 1 A Polyubiquitin-C unp residues 1-76 9606
442 2MOR 1 A Ubiquitin UNP residues 1-76 9606
443 2MJB 1 A Ubiquitin-60S ribosomal protein L40 Ubiquitin-like 3 domain 9606
444 2MJ5 1 A Polyubiquitin-C UNP residuses 1-76 9606
445 2MI8 1 A Ubiquitin 9606
446 2RU6 1 A Ubiquitin 9606
447 2MCN 2 B Ubiquitin UNP residues 1-76 9606
448 2MBQ 1 A, B Ubiquitin UNP residues 1-76 9606
449 2MBO 1 A, B Ubiquitin UNP residues 1-76 9606
450 2MBH 2 A Ubiquitin 9606
451 2MBB 2 B Polyubiquitin-B UNP P0CG47 residues 1-76 9606
452 2M0X 1 A engineered ubiquitin variant 9606
453 2LZ6 1 A Ubiquitin 9606
454 2LVO 1 A Ubiquitin 9606
455 2LVP 1 A, B Ubiquitin 9606
456 2LVQ 1 A, B Ubiquitin 9606
457 2RSU 1 A Ubiquitin 9606
458 2LRW 1 A Ubiquitin, putative 185431
459 2LMC 2 B DNA-directed RNA polymerase subunit beta UNP residues 1151-1213 562 2.7.7.6 | Details
460 2LJ5 1 A Ubiquitin 9606
461 2LD9 1 A Ubiquitin 9606
462 2L7R 1 A Ubiquitin-like protein FUBI 9606
463 2L3Z 1 A Ubiquitin UNP Residues 1-76 9606
464 2L0T 1 A Ubiquitin 9606
465 2L0F 1 A Ubiquitin 9606
466 2L00 2 B Ubiquitin ubiquitin core domain 4932
467 2RR9 1 A, B ubiquitin 9606
468 2KX0 1 A ubiquitin B 9606
469 2KWV 2 B Ubiquitin 9606
470 2KWU 2 B Ubiquitin 9606
471 2KTF 1 A Ubiquitin 9606
472 2KOX 1 A Ubiquitin 9606
473 2KO3 1 A NEDD8 9606
474 2KN5 1 A Ubiquitin 9606
475 2KLG 1 A Ubiquitin 9606
476 2KLC 1 A Ubiquilin-1 Ubiquitin-like domain: Residues 34-112 9606
477 2KJH 2 B Ubiquitin 9606
478 2KHW 2 B Ubiquitin 9606
479 2KDB 1 A Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein Ubiquitin-like domain, residues 9-85 9606
480 2KDE 2 B, C Ubiquitin 8355
481 2KDF 2 B, C Ubiquitin 9606
482 2K8B 1 A Ubiquitin 9606
483 2K8C 1 A Ubiquitin 9606
484 2K6D 2 B Ubiquitin ubiquitin 9606
485 2K39 1 A Ubiquitin 8355
486 2K25 1 A UBB 9606
487 2JZZ 1 A Ubiquitin 9606
488 2JY6 1 A Ubiquitin protein 9606
489 2JWZ 1 A Ubiquitin 4932
490 2JVC 1 A ubiquitin_like protein
491 2JT4 2 B Ubiquitin SH3 domain sequence database residues 350-420 4932
492 2Z59 2 B Ubiquitin 9606
493 2JRI 2 B, C UBC protein sequence database residues 318-469 9606
494 2JQ4 1 A Hypothetical protein Atu2571 358
495 2PE9 1 A, B Ubiquitin 9606
496 2PEA 1 A, B Ubiquitin 9606
497 2NR2 1 A Ubiquitin 9606
498 2DZI 1 A Ubiquitin-like protein 4A ubiquitin-like domain 9606
499 2G3Q 2 B Ubiquitin 4932
500 2DEN 2 B Ubiquitin 9606
501 2FUH 2 B Ubiquitin Ubiquitin 10116
502 1ZW7 1 A Ubiquitin 4932
503 1ZGU 2 B Ubiquitin 9606
504 1YX5 2 B Ubiquitin Sequence Database Residues 1-76 9606
505 1YX6 2 B Ubiquitin Sequence Database Residues 1-76 9606
506 1WY8 1 A Np95-like ring finger protein, isoform a ubiquitin-like domain 9606 2.3.2.27 | Details
507 1WX9 1 A HLA-B associated transcript-3 isoform b ubiquitin-like domain 9606
508 2BGF 1 A, B DI-UBIQUITIN ISOPEPTIDE BOND BETWEEN GLY76A AND LYS48B 9606
509 1XQQ 1 A ubiquitin 9606
510 1WR1 1 A Ubiquitin 4932
511 1V80 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
512 1V81 1 A Ubiquitin/60s ribosomal protein L40 fusion 9913
513 1Q5W 2 B Ubiquitin 9606
514 1Q0W 2 B Ubiquitin 4932
515 1UH6 1 A ubiquitin-like 5 10090
516 1P0R 1 A ubiquitin-like 5 9606
517 1OTR 2 B Ubiquitin 4932
518 1M94 1 A Protein YNR032c-a 4932
519 1G6J 1 A UBIQUITIN 9606
520 1FXT 2 B UBIQUITIN 9606
521 1D3Z 1 A PROTEIN (UBIQUITIN) 9606
522 1C3T 1 A PROTEIN (1D8 UBIQUITIN) 9606
523 1UD7 1 A PROTEIN (UBIQUITIN CORE MUTANT 1D7) 9606
524 1BT0 1 A PROTEIN (UBIQUITIN-LIKE PROTEIN 7, RUB1) 3702