Sequence Similarity Clusters for the Entities in PDB 3VHT

Entity #1 | Chains: A
Green fluorescent protein protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 52673
95 % 242 272 63 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 258 315 33
70 % 261 320 41
50 % 262 322 78
40 % 272 335 89
30 % 459 555 15
Entity #2 | Chains: B
Green fluorescent protein,ATPase WRNIP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52674
95 % 1 1 43508
90 % 3 4 14186
70 % 3 4 13256
50 % 3 4 11743
40 % 3 4 10534
30 % 3 4 8971
Entity #3 | Chains: C
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 189 428 4
95 % 200 452 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 210 466 6
70 % 225 506 9
50 % 231 527 10
40 % 237 547 16
30 % 279 697 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3AI4 1 A yeast enhanced green fluorescent protein,DNA polymerase iota recidues 1-230 for yeast enhanced green fluorescent protein,UBIQUITIN BINDING MOTIF FUSION PROTEIN for DNA polymerase iota 10090 2.7.7.7 | Details
2 4Z4M 1 A, B Green fluorescent protein,Tax1-binding protein 1 UBZ2 9606
3 3VHT 2 B Green fluorescent protein,ATPase WRNIP1 THE FUSION PROTEIN OF YEAST ENHANCED GREEN FLUORESCENT PROTEIN, LINKER (GLY-SER) AND HUMAN WRNIP1 UBZ GFP,Wrnip1 UBZ domain (UNP RESIDUES 9-46) 9606 3.6.1.3 | Details
4 4Z4K 1 A, B Green fluorescent protein,Tax1-binding protein 1 UBZ1 and UBZ2 9606