Sequence Similarity Clusters for the Entities in PDB 3VHT

Entity #1 | Chains: A
Green fluorescent protein protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59785
95 % 223 248 67 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 236 288 36
70 % 240 293 43
50 % 241 294 79
40 % 242 295 96
30 % 431 516 17
Entity #2 | Chains: B
Green fluorescent protein,ATPase WRNIP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57872
95 % 1 1 41178
90 % 1 1 39322
70 % 3 4 11241
50 % 3 4 10076
40 % 3 4 9163
30 % 3 4 8023
Entity #3 | Chains: C
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 142 321 4
95 % 176 396 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 190 423 6
70 % 199 446 8
50 % 205 467 11
40 % 216 491 16
30 % 439 1044 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3AI4 1 A yeast enhanced green fluorescent protein,DNA polymerase iota recidues 1-230 for yeast enhanced green fluorescent protein,UBIQUITIN BINDING MOTIF FUSION PROTEIN for DNA polymerase iota 10090 2.7.7.7 | Details
2 4Z4M 1 A, B Green fluorescent protein,Tax1-binding protein 1 UBZ2 9606
3 3VHT 2 B Green fluorescent protein,ATPase WRNIP1 THE FUSION PROTEIN OF YEAST ENHANCED GREEN FLUORESCENT PROTEIN, LINKER (GLY-SER) AND HUMAN WRNIP1 UBZ GFP,Wrnip1 UBZ domain (UNP RESIDUES 9-46) 9606 3.6.1.3 | Details
4 4Z4K 1 A, B Green fluorescent protein,Tax1-binding protein 1 UBZ1 and UBZ2 9606