Sequence Similarity Clusters for the Entities in PDB 3VHT

Entity #1 | Chains: A
Green fluorescent protein protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58700
95 % 207 230 74 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 219 268 37
70 % 222 272 47
50 % 223 273 83
40 % 224 274 100
30 % 409 489 17
Entity #2 | Chains: B
Green fluorescent protein,ATPase WRNIP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56817
95 % 1 1 40440
90 % 1 1 38644
70 % 3 4 11060
50 % 3 4 9911
40 % 3 4 9021
30 % 3 4 7895
Entity #3 | Chains: C
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 141 314 4
95 % 172 383 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.0
PDBFlex
90 % 186 410 6
70 % 194 430 8
50 % 200 451 12
40 % 211 475 17
30 % 433 1026 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3AI4 1 A yeast enhanced green fluorescent protein,DNA polymerase iota recidues 1-230 for yeast enhanced green fluorescent protein,UBIQUITIN BINDING MOTIF FUSION PROTEIN for DNA polymerase iota 10090 2.7.7.7 | Details
2 4Z4M 1 A, B Green fluorescent protein,Tax1-binding protein 1 UBZ2 9606
3 3VHT 2 B Green fluorescent protein,ATPase WRNIP1 THE FUSION PROTEIN OF YEAST ENHANCED GREEN FLUORESCENT PROTEIN, LINKER (GLY-SER) AND HUMAN WRNIP1 UBZ GFP,Wrnip1 UBZ domain (UNP RESIDUES 9-46) 9606 3.6.1.3 | Details
4 4Z4K 1 A, B Green fluorescent protein,Tax1-binding protein 1 UBZ1 and UBZ2 9606