Sequence Similarity Clusters for the Entities in PDB 3VHT

Entity #1 | Chains: A
Green fluorescent protein protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49990
95 % 228 254 68 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 241 294 37
70 % 246 300 33
50 % 247 302 79
40 % 257 315 96
30 % 439 530 15
Entity #2 | Chains: B
Green fluorescent protein,ATPase WRNIP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49991
95 % 1 1 41369
90 % 3 4 13371
70 % 3 4 12531
50 % 3 4 11146
40 % 3 4 10019
30 % 3 4 8094
Entity #3 | Chains: C
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 180 401 4
95 % 191 425 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 200 438 6
70 % 213 471 8
50 % 219 492 10
40 % 231 518 15
30 % 283 685 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3AI4 1 A yeast enhanced green fluorescent protein,DNA polymerase iota recidues 1-230 for yeast enhanced green fluorescent protein,UBIQUITIN BINDING MOTIF FUSION PROTEIN for DNA polymerase iota 10090 2.7.7.7 | Details
2 4Z4M 1 A, B Green fluorescent protein,Tax1-binding protein 1 UBZ2 9606
3 3VHT 2 B Green fluorescent protein,ATPase WRNIP1 THE FUSION PROTEIN OF YEAST ENHANCED GREEN FLUORESCENT PROTEIN, LINKER (GLY-SER) AND HUMAN WRNIP1 UBZ GFP,Wrnip1 UBZ domain (UNP RESIDUES 9-46) 9606 3.6.1.3 | Details
4 4Z4K 1 A, B Green fluorescent protein,Tax1-binding protein 1 UBZ1 and UBZ2 9606