Sequence Similarity Clusters for the Entities in PDB 3VHT

Entity #1 | Chains: A
Green fluorescent protein protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50936
95 % 232 259 65 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 247 301 34
70 % 250 305 30
50 % 251 307 78
40 % 261 320 90
30 % 444 536 15
Entity #2 | Chains: B
Green fluorescent protein,ATPase WRNIP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50937
95 % 1 1 42085
90 % 3 4 13660
70 % 3 4 12815
50 % 3 4 11379
40 % 3 4 10220
30 % 3 4 8722
Entity #3 | Chains: C
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 412 4
95 % 195 436 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 204 449 6
70 % 217 485 8
50 % 223 506 10
40 % 229 526 15
30 % 271 676 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3AI4 1 A yeast enhanced green fluorescent protein,DNA polymerase iota recidues 1-230 for yeast enhanced green fluorescent protein,UBIQUITIN BINDING MOTIF FUSION PROTEIN for DNA polymerase iota 10090 2.7.7.7 | Details
2 4Z4M 1 A, B Green fluorescent protein,Tax1-binding protein 1 UBZ2 9606
3 3VHT 2 B Green fluorescent protein,ATPase WRNIP1 THE FUSION PROTEIN OF YEAST ENHANCED GREEN FLUORESCENT PROTEIN, LINKER (GLY-SER) AND HUMAN WRNIP1 UBZ GFP,Wrnip1 UBZ domain (UNP RESIDUES 9-46) 9606 3.6.1.3 | Details
4 4Z4K 1 A, B Green fluorescent protein,Tax1-binding protein 1 UBZ1 and UBZ2 9606