Sequence Similarity Clusters for the Entities in PDB 3VHT

Entity #1 | Chains: A
Green fluorescent protein protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50936
95 % 232 259 65 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 247 301 34
70 % 250 305 30
50 % 251 307 78
40 % 261 320 90
30 % 444 536 15
Entity #2 | Chains: B
Green fluorescent protein,ATPase WRNIP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50937
95 % 1 1 42085
90 % 3 4 13660
70 % 3 4 12815
50 % 3 4 11379
40 % 3 4 10220
30 % 3 4 8722
Entity #3 | Chains: C
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 184 412 4
95 % 195 436 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 204 449 6
70 % 217 485 8
50 % 223 506 10
40 % 229 526 15
30 % 271 676 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2WUR 1 A GREEN FLUORESCENT PROTEIN CHROMOPHORE FORMED BY RESIDUES 65-67 6100
2 5OXC 1 A Green fluorescent protein 6100
3 4AS8 1 A GREEN FLUORESCENT PROTEIN CHROMOPHORE RESULTING FROM THE AUTOCATALYTIC CYCLISATION OF RESIDUES 65 TO 67 6100
4 4LQT 1 A Green fluorescent protein 6100
5 4KAG 1 A Green fluorescent protein 6100
6 5OXA 1 A Green fluorescent protein 6100
7 4GF6 1 B green fluorescent protein 6100
8 5DRF 1 A WasCFP-pH5.5 at pH 5.5 210840
9 5DRG 1 A Green/cyan WasCFP_pH10 at pH 10.0 210840
10 3SRY 1 A Green fluorescent protein 6100
11 2AWK 1 A green fluorescent protein residues 1-229 6100
12 2WSO 1 A GREEN FLUORESCENT PROTEIN CHROMOPHORE RESULTING FROM AUTOCATALYTIC CYCLIZATION OF CONSECUTIVE AMINO ACID RESIDUES THR65, TRP66 AND GLY67. RESIDUES 2-238 6100
13 4RYS 1 A NowGFP 141850
14 2HQZ 1 A Green fluorescent protein 6100
15 6FWW 1 A Green fluorescent protein The heteroatom CRO stands for the peptide backbone cyclization and chromophore formation from residues Thr65, Tyr66, and Gly67. 6100
16 3ST0 1 A Green fluorescent protein 6100
17 4L1I 1 A EGFP-based Calcium Sensor CatchER SEE REMARK 999 6100
18 2HFC 1 A Green fluorescent protein 6100
19 2HJO 1 A Green Fluorescent Protein 6100
20 4AR7 1 A GREEN FLUORESCENT PROTEIN CHROMOPHORE RESULTING FROM THE AUTOCATALYTIC CYCLISATION OF RESIDUES 65 TO 67 6100
21 2DUH 1 A Green fluorescent protein 6100
22 2QZ0 1 A Green fluorescent protein 6100
23 4J8A 1 A Green fluorescent protein 6100
24 2FZU 1 A Green fluorescent protein 6100
25 1OXD 1 A cyan fluorescent protein cfp 141850
26 3SSH 1 A Green fluorescent protein 6100
27 2DUE 1 A Green fluorescent protein 6100
28 4GES 1 B Green fluorescent protein 6100
29 1OXE 1 A cyan fluorescent protein cfp 141850
30 3LA1 1 A Green fluorescent protein 6100
31 5OX8 1 A Green fluorescent protein CHROMOPHORE RESULTING FROM AUTOCATALYTIC CYCLIZATION OF CONSECUTIVE AMINO ACID RESIDUES THR65, TRP66 AND GLY67 6100
32 2G6E 1 A Green fluorescent protein 6100
33 3SVB 1 A Green fluorescent protein 6100
34 3ZTF 1 A GREEN FLUORESCENT PROTEIN CHROMOPHORE RESULTING FROM THE AUTOCATALYTIC CYCLISATION OF RESIDUES 65 TO 67 (SWG) RESIDUES 2-238 6100
35 3SVC 1 A Green fluorescent protein 6100
36 5DQB 1 A WasCFP_pH2 210840
37 2HCG 1 A Green fluorescent protein 6100
38 3CB9 1 A Green fluorescent protein 6100
39 4EUL 1 A Green fluorescent protein 6100
40 5NI3 1 A Green fluorescent protein 6100
41 5NI3 2 B Green fluorescent protein 6100
42 5NI3 3 C, D Green fluorescent protein 6100
43 5DQM 1 A WasCFP_pH2 210840
44 3SSK 1 A Green fluorescent protein 6100
45 3DQ7 1 A Green fluorescent protein 6100
46 3CD1 1 A Green fluorescent protein 6100
47 5WJ3 1 A, B Green fluorescent protein 6100
48 1YJF 1 A Green Fluorescent Protein 6100
49 5OXB 1 A Green fluorescent protein 6100
50 1KYP 1 A Green Fluorescent Protein 6100
51 2WSN 1 A GREEN FLUORESCENT PROTEIN CHROMOPHORE RESULTING FROM AUTOCATALYTIC CYCLIZATION OF CONSECUTIVE AMINO ACID RESIDUES THR65, TRP66 AND GLY67. RESIDUES 2-238 6100
52 2HRS 1 A Green fluorescent protein 6100
53 2DUI 1 A Green fluorescent protein 6100
54 4RTC 1 A nowGFP 32630
55 2FWQ 1 A Green fluorescent protein 6100
56 2QT2 1 A Green fluorescent protein 6100
57 3W1C 1 A Green Fluorescent protein 6100
58 5AQB 2 B GREEN FLUORESCENT PROTEIN 6100
59 5MA4 1 B Green fluorescent protein 6100
60 3I19 1 A Green fluorescent protein 6100
61 4N3D 1 A, B Green fluorescent protein 6100
62 3SSL 1 A Green fluorescent protein 6100
63 3SST 1 A Green fluorescent protein 6100
64 4B5Y 1 A GREEN FLUORESCENT PROTEIN CHROMOPHORE RESULTING FROM THE AUTOCATALYTIC CYCLISATION OF RESIDUES 65 TO 67 6100
65 1Q4E 1 A Green Fluorescent Protein 6100
66 1KYS 1 A Green Fluorescent Protein 6100
67 2YE0 1 A GREEN FLUORESCENT PROTEIN 6100
68 2DUG 1 A Green fluorescent protein 6100
69 4P1Q 1 A Green fluorescent protein 6100
70 2Y0G 1 A GREEN FLUORESCENT PROTEIN CHROMOPHORE RESULTING FROM AUTOCATALYTIC CYCLIZATION OF CONSECUTIVE AMINO ACID RESIDUES THR65, TYR66 AND GLY67. 6100
71 1QYF 1 A green-fluorescent protein residues 1-229 6100
72 5DPH 1 A, B Green fluorescent protein 6100
73 2H6V 1 A Green fluorescent protein 6100
74 1KYR 1 A Green Fluorescent Protein 6100
75 3SVE 1 A Green fluorescent protein 6100
76 5EHU 1 A, B Green fluorescent protein 6100
77 5DTX 1 A Green fluorescent protein 6100
78 2O24 1 A Green fluorescent protein 6100
79 3SS0 1 A Green fluorescent protein 6100
80 4H48 1 A Green fluorescent protein 6100
81 2B3P 1 A green fluorescent protein 6100
82 3CBE 1 A Green fluorescent protein 6100
83 3DQH 1 A Green fluorescent protein 6100
84 1Q4A 1 A Green Fluorescent Protein 6100
85 3DQ9 1 A Green fluorescent protein 6100
86 3DQK 1 A Green fluorescent protein 6100
87 3DQD 1 A Green fluorescent protein 6100
88 3DQU 1 A Green fluorescent protein 6100
89 3CD9 1 A Green fluorescent protein 6100
90 5J2O 1 A Green fluorescent protein 6100
91 5OX9 1 A Green fluorescent protein CHROMOPHORE RESULTING FROM AUTOCATALYTIC CYCLIZATION OF CONSECUTIVE AMINO ACID RESIDUES THR65, TRP66 AND GLY67 6100
92 1YJ2 1 A Green Fluorescent Protein 6100
93 2DUF 1 A Green fluorescent protein 6100
94 3DQN 1 A Green fluorescent protein 6100
95 3DQE 1 A Green fluorescent protein 6100
96 3SV5 1 A Green fluorescent protein 6100
97 3DQI 1 A Green fluorescent protein 6100
98 1Z1Q 1 A Green Fluorescent Protein F64L, S65T, Y66L 6100
99 5DTZ 1 A, B, C, D Green fluorescent protein 6100
100 1JBZ 1 A GREEN FLUORESCENT PROTEIN 6100
101 3DQA 1 A Green fluorescent protein 6100
102 5T3I 1 A Green fluorescent protein 6100
103 3DQM 1 A Green fluorescent protein 6100
104 3DQF 1 A Green fluorescent protein 6100
105 5DTY 1 A Green fluorescent protein 6100
106 2YDZ 1 A GREEN FLUORESCENT PROTEIN 6100
107 5N9O 1 A Green fluorescent protein 6100
108 1H6R 1 A, B, C GREEN FLUORESCENT PROTEIN 6100
109 3DQ4 1 A Green fluorescent protein 6100
110 5MAD 2 B, D, F, H Green fluorescent protein 6100
111 1S6Z 1 A green fluorescent protein 32630
112 5MA9 1 B, D, F, H Green fluorescent protein 6100
113 3W1D 1 A Green Fluorescent protein 6100
114 4LQU 1 A, B, C, D Green fluorescent protein 6100
115 3DPX 1 A Green fluorescent protein 6100
116 3SSP 1 A Green fluorescent protein 6100
117 2YE1 1 A GREEN FLUORESCENT PROTEIN 6100
118 3DQL 1 A Green fluorescent protein 6100
119 1Q4B 1 A Green Fluorescent Protein 6100
120 4KA9 1 A Green fluorescent protein 6100
121 3G9A 1 A Green fluorescent protein 6100
122 3DQ5 1 A Green fluorescent protein 6100
123 2QLE 1 A, B, C, D Green fluorescent protein 6100
124 1Q4C 1 A Green Fluorescent Protein 6100
125 1YHH 1 A green fluorescent protein F64L, S65A, Y66S, G67A, F99S, M153T, V163A 6100
126 3DQC 1 A Green fluorescent protein 6100
127 3DQO 1 A Green fluorescent protein 6100
128 5WJ4 1 A, B Green fluorescent protein 6100
129 4KEX 1 A Green fluorescent protein 6100
130 2AWJ 1 A green-fluorescent protein residues 1-229 6100
131 5O8C 1 A Green fluorescent protein HIS A -8 EXPRESSION TAG HIS A -7 EXPRESSION TAG HIS A -6 EXPRESSION TAG HIS A -5 EXPRESSION TAG HIS A -4 EXPRESSION TAG HIS A -3 EXPRESSION TAG THR A -2 EXPRESSION TAG ASP A -1 EXPRESSION TAG PRO A 0 EXPRESSION TAG MET A 1 EXPRESSION TAG VAL A 2 MET 1 ENGINEERED MUTATION LEU A 65 PHE 64 ENGINEERED MUTATION PIA A 68 SER 65 CHROMOPHORE PIA A 68 TYR 66 CHROMOPHORE PIA A 68 GLY 67 CHROMOPHORE LEU A 70 GLN 69 ENGINEERED MUTATION SER A 164 VAL 163 ENGINEERED MUTATION LYS A 207 ALA 206 ENGINEERED MUTATION LEU A 232 HIS 231 ENGINEERED MUTATION 6100
132 4EN1 1 A, B Green fluorescent protein 6100
133 3DQ8 1 A Green fluorescent protein 6100
134 2QRF 1 A Green fluorescent protein 6100
135 3DQJ 1 A Green fluorescent protein 6100
136 5O8A 1 A Green fluorescent protein HIS A -8 EXPRESSION TAG HIS A -7 EXPRESSION TAG HIS A -6 EXPRESSION TAG HIS A -5 EXPRESSION TAG HIS A -4 EXPRESSION TAG HIS A -3 EXPRESSION TAG THR A -2 EXPRESSION TAG ASP A -1 EXPRESSION TAG PRO A 0 EXPRESSION TAG MET A 1 EXPRESSION TAG VAL A 2 MET 1 ENGINEERED MUTATION LEU A 65 PHE 64 ENGINEERED MUTATION PIA A 68 SER 65 CHROMOPHORE PIA A 68 TYR 66 CHROMOPHORE PIA A 68 GLY 67 CHROMOPHORE LEU A 70 GLN 69 ENGINEERED MUTATION SER A 164 VAL 163 ENGINEERED MUTATION LYS A 207 ALA 206 ENGINEERED MUTATION LEU A 232 HIS 231 ENGINEERED MUTATION 6100
137 1Q73 1 A Green Fluorescent Protein 6100
138 5HBD 1 A Green fluorescent protein 6100
139 3GEX 1 A Green fluorescent protein 6100
140 3ST3 1 A, B, C Dreiklang 6100
141 3DQ6 1 A Green fluorescent protein 6100
142 5MA3 1 B Green fluorescent protein 6100
143 1Q4D 1 A Green Fluorescent Protein 6100
144 4L13 1 A EGFP-based Calcium Sensor CatchER SEE REMARK 999 6100
145 5O89 1 A Green fluorescent protein 6100
146 2HGD 1 A Green fluorescent protein 6100
147 2QU1 1 A Green fluorescent protein 6100
148 6AS9 1 A Green fluorescent protein 6100
149 3DPW 1 A Green fluorescent protein 6100
150 3SSY 1 A Green fluorescent protein 6100
151 3DQ2 1 A Green fluorescent protein 6100
152 4KW4 1 A Green fluorescent protein The protein in this structure is a version of GFP called Emerald GFP 6100
153 3DQ3 1 A Green fluorescent protein 6100
154 3SVD 1 A Green fluorescent protein 6100
155 5DPG 1 A Green fluorescent protein 6100
156 5MA5 1 B, D Green fluorescent protein 6100
157 1OXF 1 A cyan fluorescent protein cfp 141850
158 5JZK 1 A, B Green fluorescent protein UNP residues 3-238 6100
159 2H9W 1 A Green fluorescent protein 6100
160 5JZL 1 A, B Green fluorescent protein UNP residues 3-238 6100
161 4KW9 1 A Green fluorescent protein The protein in this structure is a version of GFP called Emerald GFP 6100
162 2O29 1 A Green fluorescent protein 6100
163 1RMO 1 A wunen-nonfunctional GFP fusion protein [3,2]Tpa-containing 6100
164 3SSV 1 A Green fluorescent protein 6100
165 3ST2 1 A, B, C Dreiklang 6100
166 2AWM 1 A green fluorescent protein 6100
167 4L12 1 A EGFP-based Calcium Sensor CatchER SEE REMARK 999 6100
168 3DPZ 1 A Green fluorescent protein 6100
169 5HGE 1 A Green fluorescent protein 6100
170 1W7S 1 A, B, C, D GREEN FLUORESCENT PROTEIN THE CHROMOPHORE, GYS, IS PART OF THE PEPTIDE CHAIN BETWEEN RESIDUES 64 AND 68. 6100
171 1JBY 1 A GREEN FLUORESCENT PROTEIN 6100
172 3DQ1 1 A Green fluorescent protein 6100
173 1QYO 1 A green-fluorescent protein 6100
174 1W7T 1 A, B, C, D GREEN FLUORESCENT PROTEIN THE CHROMOPHORE, GYS, IS PART OF THE PEPTIDE CHAIN BETWEEN RESIDUES 64 AND 68. 6100
175 1W7U 1 A, B, C, D GREEN FLUORESCENT PROTEIN THE CHROMOPHORE (GYS, 5-(1-AMINO-2-HYDROXYETHYL)-1-CARBOXYMETHYL-3-((P-HYDROXYPHENYL)-METHYLENE)-IMIDAZOL-2-ONE)IS PART OF THE PEPTIDE CHAIN BETWEEN RESIDUES 64 AND 68. 6100
176 4W6B 1 A, B fluorescent protein K26C 32630
177 3UFZ 1 A Green fluorescent protein UNP RESIDUES 2-229 6100
178 1HCJ 1 A, B, C, D GREEN FLUORESCENT PROTEIN 6100
179 3GJ1 1 A, B, C, D Green fluorescent protein 6100
180 4H47 1 A Green fluorescent protein 6100
181 1QYQ 1 A green-fluorescent protein 6100
182 3ST4 1 A, B, C Dreiklang 6100
183 1RMM 1 A SIGF1-GFP fusion protein 6100
184 2O2B 1 A Green fluorescent protein 6100
185 1Z1P 1 A green fluorescent protein F64L, S65T, Y66L 6100
186 3V3D 1 A Yellow fluorescent protein 6100
187 3GJ2 1 A, B, C, D Green fluorescent protein 6100
188 5BT0 1 A, B Green fluorescent protein 6100
189 1EMG 1 A PROTEIN (GREEN FLUORESCENT PROTEIN) 6100
190 4J88 1 A, B Green fluorescent protein 6100
191 1GFL 1 A, B GREEN FLUORESCENT PROTEIN 6100
192 2EMD 1 A GREEN FLUORESCENT PROTEIN 6100
193 2Q57 1 A Cerulean Green fluorescent protein 6100
194 1YHI 1 A Green Fluorescent Protein S65A, Y66S, R96A, F99S, M153T, V163A 6100
195 2AHA 1 A, B Green fluorescent protein GFP 6100
196 1JC1 1 A, B, C GREEN FLUORESCENT PROTEIN 6100
197 5O8B 1 A Green fluorescent protein HIS A -8 EXPRESSION TAG HIS A -7 EXPRESSION TAG HIS A -6 EXPRESSION TAG HIS A -5 EXPRESSION TAG HIS A -4 EXPRESSION TAG HIS A -3 EXPRESSION TAG THR A -2 EXPRESSION TAG ASP A -1 EXPRESSION TAG PRO A 0 EXPRESSION TAG MET A 1 EXPRESSION TAG VAL A 2 MET 1 ENGINEERED MUTATION LEU A 65 PHE 64 ENGINEERED MUTATION PIA A 68 SER 65 CHROMOPHORE PIA A 68 TYR 66 CHROMOPHORE PIA A 68 GLY 67 CHROMOPHORE LEU A 70 GLN 69 ENGINEERED MUTATION SER A 164 VAL 163 ENGINEERED MUTATION LYS A 207 ALA 206 ENGINEERED MUTATION LEU A 232 HIS 231 ENGINEERED MUTATION 6100
198 1QY3 1 A green-fluorescent protein residues 1-229 6100
199 5BTT 1 A Green fluorescent protein 6100
200 5BTT 2 B Green fluorescent protein 6100
201 1BFP 1 A BLUE FLUORESCENT PROTEIN 6100
202 3UG0 1 A Green fluorescent protein UNP RESIDUES 2-229 6100
203 2OKW 1 A, B, C, D, E, F Green fluorescent protein 6100
204 4XL5 1 A Green fluorescent protein 6100
205 4J89 1 A, B Green fluorescent protein 6100
206 1HUY 1 A GREEN FLUORESCENT PROTEIN 6100
207 1F0B 1 A GREEN FLUORESCENT PROTEIN 6100
208 1QXT 1 A green-fluorescent protein residues 1-229 6100
209 1EMK 1 A GREEN FLUORESCENT PROTEIN 6100
210 1JC0 1 A, B, C GREEN FLUORESCENT PROTEIN 6100
211 1EMB 1 A GREEN FLUORESCENT PROTEIN CHROMOPHORE CONTAINING PROTEIN 65 - 67 DENOTED AS CRO 6100
212 2AWL 1 A green fluorescent protein RESIDUES 1-229 6100
213 2HGY 1 A Green fluorescent protein 6100
214 4OGS 1 A, B Green fluorescent protein 6100
215 1F09 1 A GREEN FLUORESCENT PROTEIN 6100
216 1C4F 1 A GREEN FLUORESCENT PROTEIN 6100
217 1RRX 1 A SIGF1-GFP fusion protein contains 3-fluoro-tyrosine 6100
218 3K1K 1 A, B Green Fluorescent Protein 6100
219 2Q6P 1 A Green fluorescent protein mutant 3 6100
220 4KW8 1 A Green fluorescent protein The protein in this structure is a version of GFP called Emerald GFP 6100
221 2AH8 1 A, B Green fluorescent protein GFP 6100
222 1EMM 1 A GREEN FLUORESCENT PROTEIN 6100
223 2EMN 1 A GREEN FLUORESCENT PROTEIN 6100
224 1MYW 1 A Green fluorescent protein SEYFP-F46L variant residues 2-230 6100
225 5MA8 2 B, D Green fluorescent protein 6100
226 1EML 1 A GREEN FLUORESCENT PROTEIN 6100
227 1EMC 1 A, B, C, D GREEN FLUORESCENT PROTEIN 6100
228 2B3Q 1 A, B, C, D green fluorescent protein 6100
229 5MA6 1 A Green fluorescent protein 6100
230 1EMF 1 A GREEN FLUORESCENT PROTEIN 6100
231 2YFP 1 A PROTEIN (GREEN FLUORESCENT PROTEIN) 6100
232 3VHT 1 A Green fluorescent protein GFP domain 6100
233 5HZO 1 A, B Green fluorescent protein UNP residues 1-235 6100
234 5WJ2 1 A, B Green fluorescent protein 6100
235 5DPJ 1 A, B, C, D Green fluorescent protein 6100
236 5DU0 1 A, B, C, D Green fluorescent protein 6100
237 1CV7 1 A GREEN FLUORESCENT PROTEIN 6100
238 1B9C 1 A, B, C, D PROTEIN (GREEN FLUORESCENT PROTEIN) 6100
239 1YFP 1 A, B YELLOW FLUORESCENT PROTEIN 6100
240 5DPI 1 A, B, C, D, E, F Green fluorescent protein 6100
241 1EME 1 A GREEN FLUORESCENT PROTEIN 6100
242 5MFC 2 B, D (KR)4-Green fluorescent protein,Green fluorescent protein 6100
243 2OKY 1 A, B Green fluorescent protein 6100
244 4RYW 1 A, B, C NowGFP_conv
245 1YHG 1 A, B green fluorescent protein F64L, S65G, Y66S, V68G, F99S, M153T, V163A 6100
246 2EMO 1 A GREEN FLUORESCENT PROTEIN 6100
247 5DY6 1 A, B Green fluorescent protein 6100
248 1KP5 1 A, B Green Fluorescent Protein 6100
249 3OGO 1 A, B, C, D Green fluorescent protein 6100
250 5MAK 1 B, D Green fluorescent protein 6100
251 5HW9 1 A Green fluorescent protein 6100
252 1RM9 1 A avermectin-sensitive chloride channel GluCl beta/cyan fluorescent protein fusion 4-Fluorotryptophan-containing 6100
253 1RMP 1 A SIGF1-GFP fusion protein 6100
254 5LEM 3 C Green fluorescent protein 6100
255 4XVP 1 A, B, C Green fluorescent protein 6100
256 4JFG 1 A, B, C, D, E, F, G, H Green fluorescent protein 6100
257 5LEL 3 C, F, I Green fluorescent protein 6100
258 6MB2 2 a, b, c, d, e, f, g, h, i, j, k, l, m, n, o Green fluorescent protein UNP residues 2-229 6100
259 1EMA 1 A GREEN FLUORESCENT PROTEIN THE PROTEIN CONTAINS SIX SE-METHIONINES. OF THESE, THE N-TERMINAL MET AND MET 233 ARE NOT PRESENT IN THE ENTRY 6100