Sequence Similarity Clusters for the Entities in PDB 3VHT

Entity #1 | Chains: A
Green fluorescent protein protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59441
95 % 223 248 65 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 235 287 36
70 % 238 291 43
50 % 239 292 80
40 % 240 293 96
30 % 429 513 17
Entity #2 | Chains: B
Green fluorescent protein,ATPase WRNIP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 57537
95 % 1 1 40968
90 % 1 1 39121
70 % 3 4 11177
50 % 3 4 10019
40 % 3 4 9116
30 % 3 4 7981
Entity #3 | Chains: C
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 142 321 4
95 % 176 396 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 190 423 6
70 % 199 446 8
50 % 205 467 11
40 % 216 491 15
30 % 439 1044 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2WUR 1 A GREEN FLUORESCENT PROTEIN CHROMOPHORE FORMED BY RESIDUES 65-67 6100
2 5OXC 1 A EGFP 10245
3 4AS8 1 A GREEN FLUORESCENT PROTEIN CHROMOPHORE RESULTING FROM THE AUTOCATALYTIC CYCLISATION OF RESIDUES 65 TO 67 6100
4 4LQT 1 A Green fluorescent protein 6100
5 4KAG 1 A Green fluorescent protein 6100
6 5OXA 1 A Green fluorescent protein 6100
7 4GF6 1 B green fluorescent protein 6100
8 5DRF 1 A WasCFP-pH5.5 at pH 5.5 210840
9 5DRG 1 A Green/cyan WasCFP_pH10 at pH 10.0 210840
10 3SRY 1 A Green fluorescent protein 6100
11 2AWK 1 A green fluorescent protein residues 1-229 6100
12 2WSO 1 A GREEN FLUORESCENT PROTEIN CHROMOPHORE RESULTING FROM AUTOCATALYTIC CYCLIZATION OF CONSECUTIVE AMINO ACID RESIDUES THR65, TRP66 AND GLY67. RESIDUES 2-238 6100
13 4RYS 1 A NowGFP 141850
14 2HQZ 1 A Green fluorescent protein 6100
15 3ST0 1 A Green fluorescent protein 6100
16 4L1I 1 A EGFP-based Calcium Sensor CatchER SEE REMARK 999 6100
17 2HFC 1 A Green fluorescent protein 6100
18 2HJO 1 A Green Fluorescent Protein 6100
19 4AR7 1 A GREEN FLUORESCENT PROTEIN CHROMOPHORE RESULTING FROM THE AUTOCATALYTIC CYCLISATION OF RESIDUES 65 TO 67 6100
20 2DUH 1 A Green fluorescent protein 6100
21 2QZ0 1 A Green fluorescent protein 6100
22 4J8A 1 A Green fluorescent protein 6100
23 2FZU 1 A Green fluorescent protein 6100
24 1OXD 1 A cyan fluorescent protein cfp 141850
25 3SSH 1 A Green fluorescent protein 6100
26 2DUE 1 A Green fluorescent protein 6100
27 4GES 1 B Green fluorescent protein 6100
28 1OXE 1 A cyan fluorescent protein cfp 141850
29 3LA1 1 A Green fluorescent protein 6100
30 5OX8 1 A Green fluorescent protein CHROMOPHORE RESULTING FROM AUTOCATALYTIC CYCLIZATION OF CONSECUTIVE AMINO ACID RESIDUES THR65, TRP66 AND GLY67 6100
31 2G6E 1 A Green fluorescent protein 6100
32 3SVB 1 A Green fluorescent protein 6100
33 3ZTF 1 A GREEN FLUORESCENT PROTEIN CHROMOPHORE RESULTING FROM THE AUTOCATALYTIC CYCLISATION OF RESIDUES 65 TO 67 (SWG) RESIDUES 2-238 6100
34 3SVC 1 A Green fluorescent protein 6100
35 5DQB 1 A WasCFP_pH2 210840
36 2HCG 1 A Green fluorescent protein 6100
37 3CB9 1 A Green fluorescent protein 6100
38 4EUL 1 A Green fluorescent protein 6100
39 5DQM 1 A WasCFP_pH2 210840
40 3SSK 1 A Green fluorescent protein 6100
41 3DQ7 1 A Green fluorescent protein 6100
42 3CD1 1 A Green fluorescent protein 6100
43 1YJF 1 A Green Fluorescent Protein 6100
44 5OXB 1 A Green fluorescent protein 6100
45 1KYP 1 A Green Fluorescent Protein 6100
46 2WSN 1 A GREEN FLUORESCENT PROTEIN CHROMOPHORE RESULTING FROM AUTOCATALYTIC CYCLIZATION OF CONSECUTIVE AMINO ACID RESIDUES THR65, TRP66 AND GLY67. RESIDUES 2-238 6100
47 2HRS 1 A Green fluorescent protein 6100
48 2DUI 1 A Green fluorescent protein 6100
49 4RTC 1 A nowGFP 32630
50 2FWQ 1 A Green fluorescent protein 6100
51 2QT2 1 A Green fluorescent protein 6100
52 3W1C 1 A Green Fluorescent protein 6100
53 5AQB 2 B GREEN FLUORESCENT PROTEIN 6100
54 5MA4 1 B Green fluorescent protein 6100
55 3I19 1 A Green fluorescent protein 6100
56 4N3D 1 A, B Green fluorescent protein 6100
57 3SSL 1 A Green fluorescent protein 6100
58 3SST 1 A Green fluorescent protein 6100
59 4B5Y 1 A GREEN FLUORESCENT PROTEIN CHROMOPHORE RESULTING FROM THE AUTOCATALYTIC CYCLISATION OF RESIDUES 65 TO 67 6100
60 1Q4E 1 A Green Fluorescent Protein 6100
61 1KYS 1 A Green Fluorescent Protein 6100
62 2YE0 1 A GREEN FLUORESCENT PROTEIN 6100
63 2DUG 1 A Green fluorescent protein 6100
64 4P1Q 1 A Green fluorescent protein 6100
65 2Y0G 1 A GREEN FLUORESCENT PROTEIN CHROMOPHORE RESULTING FROM AUTOCATALYTIC CYCLIZATION OF CONSECUTIVE AMINO ACID RESIDUES THR65, TYR66 AND GLY67. 6100
66 1QYF 1 A green-fluorescent protein residues 1-229 6100
67 5DPH 1 A, B Green fluorescent protein 6100
68 2H6V 1 A Green fluorescent protein 6100
69 1KYR 1 A Green Fluorescent Protein 6100
70 3SVE 1 A Green fluorescent protein 6100
71 5EHU 1 A, B Green fluorescent protein 6100
72 5DTX 1 A Green fluorescent protein 6100
73 2O24 1 A Green fluorescent protein 6100
74 3SS0 1 A Green fluorescent protein 6100
75 4H48 1 A Green fluorescent protein 6100
76 2B3P 1 A green fluorescent protein 6100
77 3CBE 1 A Green fluorescent protein 6100
78 3DQH 1 A Green fluorescent protein 6100
79 1Q4A 1 A Green Fluorescent Protein 6100
80 3DQ9 1 A Green fluorescent protein 6100
81 3DQK 1 A Green fluorescent protein 6100
82 3DQD 1 A Green fluorescent protein 6100
83 3DQU 1 A Green fluorescent protein 6100
84 3CD9 1 A Green fluorescent protein 6100
85 5J2O 1 A Green fluorescent protein 6100
86 5OX9 1 A Green fluorescent protein CHROMOPHORE RESULTING FROM AUTOCATALYTIC CYCLIZATION OF CONSECUTIVE AMINO ACID RESIDUES THR65, TRP66 AND GLY67 6100
87 1YJ2 1 A Green Fluorescent Protein 6100
88 2DUF 1 A Green fluorescent protein 6100
89 3DQN 1 A Green fluorescent protein 6100
90 3DQE 1 A Green fluorescent protein 6100
91 3SV5 1 A Green fluorescent protein 6100
92 3DQI 1 A Green fluorescent protein 6100
93 1Z1Q 1 A Green Fluorescent Protein F64L, S65T, Y66L 6100
94 5DTZ 1 A, B, C, D Green fluorescent protein 6100
95 1JBZ 1 A GREEN FLUORESCENT PROTEIN 6100
96 3DQA 1 A Green fluorescent protein 6100
97 5T3I 1 A Green fluorescent protein 6100
98 3DQM 1 A Green fluorescent protein 6100
99 3DQF 1 A Green fluorescent protein 6100
100 5DTY 1 A Green fluorescent protein 6100
101 2YDZ 1 A GREEN FLUORESCENT PROTEIN 6100
102 1H6R 1 A, B, C GREEN FLUORESCENT PROTEIN 6100
103 3DQ4 1 A Green fluorescent protein 6100
104 5MAD 2 B, D, F, H Green fluorescent protein 6100
105 1S6Z 1 A green fluorescent protein 32630
106 5MA9 1 B, D, F, H Green fluorescent protein 6100
107 3W1D 1 A Green Fluorescent protein 6100
108 4LQU 1 A, B, C, D Green fluorescent protein 6100
109 3DPX 1 A Green fluorescent protein 6100
110 3SSP 1 A Green fluorescent protein 6100
111 2YE1 1 A GREEN FLUORESCENT PROTEIN 6100
112 3DQL 1 A Green fluorescent protein 6100
113 1Q4B 1 A Green Fluorescent Protein 6100
114 4KA9 1 A Green fluorescent protein 6100
115 3G9A 1 A Green fluorescent protein 6100
116 3DQ5 1 A Green fluorescent protein 6100
117 2QLE 1 A, B, C, D Green fluorescence protein 354
118 1Q4C 1 A Green Fluorescent Protein 6100
119 1YHH 1 A green fluorescent protein F64L, S65A, Y66S, G67A, F99S, M153T, V163A 6100
120 3DQC 1 A Green fluorescent protein 6100
121 3DQO 1 A Green fluorescent protein 6100
122 4KEX 1 A Green fluorescent protein 6100
123 2AWJ 1 A green-fluorescent protein residues 1-229 6100
124 5O8C 1 A Green fluorescent protein HIS A -8 EXPRESSION TAG HIS A -7 EXPRESSION TAG HIS A -6 EXPRESSION TAG HIS A -5 EXPRESSION TAG HIS A -4 EXPRESSION TAG HIS A -3 EXPRESSION TAG THR A -2 EXPRESSION TAG ASP A -1 EXPRESSION TAG PRO A 0 EXPRESSION TAG MET A 1 EXPRESSION TAG VAL A 2 MET 1 ENGINEERED MUTATION LEU A 65 PHE 64 ENGINEERED MUTATION PIA A 68 SER 65 CHROMOPHORE PIA A 68 TYR 66 CHROMOPHORE PIA A 68 GLY 67 CHROMOPHORE LEU A 70 GLN 69 ENGINEERED MUTATION SER A 164 VAL 163 ENGINEERED MUTATION LYS A 207 ALA 206 ENGINEERED MUTATION LEU A 232 HIS 231 ENGINEERED MUTATION 6100
125 4EN1 1 A, B Green fluorescent protein 6100
126 3DQ8 1 A Green fluorescent protein 6100
127 2QRF 1 A Green fluorescent protein 6100
128 3DQJ 1 A Green fluorescent protein 6100
129 5O8A 1 A Green fluorescent protein HIS A -8 EXPRESSION TAG HIS A -7 EXPRESSION TAG HIS A -6 EXPRESSION TAG HIS A -5 EXPRESSION TAG HIS A -4 EXPRESSION TAG HIS A -3 EXPRESSION TAG THR A -2 EXPRESSION TAG ASP A -1 EXPRESSION TAG PRO A 0 EXPRESSION TAG MET A 1 EXPRESSION TAG VAL A 2 MET 1 ENGINEERED MUTATION LEU A 65 PHE 64 ENGINEERED MUTATION PIA A 68 SER 65 CHROMOPHORE PIA A 68 TYR 66 CHROMOPHORE PIA A 68 GLY 67 CHROMOPHORE LEU A 70 GLN 69 ENGINEERED MUTATION SER A 164 VAL 163 ENGINEERED MUTATION LYS A 207 ALA 206 ENGINEERED MUTATION LEU A 232 HIS 231 ENGINEERED MUTATION 6100
130 1Q73 1 A Green Fluorescent Protein 6100
131 5HBD 1 A Green fluorescent protein 6100
132 3GEX 1 A Green fluorescent protein 6100
133 3ST3 1 A, B, C Dreiklang 6100
134 3DQ6 1 A Green fluorescent protein 6100
135 5MA3 1 B Green fluorescent protein 6100
136 1Q4D 1 A Green Fluorescent Protein 6100
137 4L13 1 A EGFP-based Calcium Sensor CatchER SEE REMARK 999 6100
138 5O89 1 A Green fluorescent protein 6100
139 2HGD 1 A Green fluorescent protein 6100
140 2QU1 1 A Green fluorescent protein 6100
141 3DPW 1 A Green fluorescent protein 6100
142 3SSY 1 A Green fluorescent protein 6100
143 3DQ2 1 A Green fluorescent protein 6100
144 4KW4 1 A Green fluorescent protein The protein in this structure is a version of GFP called Emerald GFP 6100
145 3DQ3 1 A Green fluorescent protein 6100
146 3SVD 1 A Green fluorescent protein 6100
147 5DPG 1 A Green fluorescent protein 6100
148 5MA5 1 B, D Green fluorescent protein 6100
149 1OXF 1 A cyan fluorescent protein cfp 141850
150 5JZK 1 A, B Green fluorescent protein UNP residues 3-238 6100
151 2H9W 1 A Green fluorescent protein 6100
152 5JZL 1 A, B Green fluorescent protein UNP residues 3-238 6100
153 4KW9 1 A Green fluorescent protein The protein in this structure is a version of GFP called Emerald GFP 6100
154 2O29 1 A Green fluorescent protein 6100
155 1RMO 1 A wunen-nonfunctional GFP fusion protein [3,2]Tpa-containing 6100
156 3SSV 1 A Green fluorescent protein 6100
157 3ST2 1 A, B, C Dreiklang 6100
158 2AWM 1 A green fluorescent protein 6100
159 4L12 1 A EGFP-based Calcium Sensor CatchER SEE REMARK 999 6100
160 3DPZ 1 A Green fluorescent protein 6100
161 5HGE 1 A Green fluorescent protein 6100
162 1W7S 1 A, B, C, D GREEN FLUORESCENT PROTEIN THE CHROMOPHORE, GYS, IS PART OF THE PEPTIDE CHAIN BETWEEN RESIDUES 64 AND 68. 6100
163 1JBY 1 A GREEN FLUORESCENT PROTEIN 6100
164 3DQ1 1 A Green fluorescent protein 6100
165 1QYO 1 A green-fluorescent protein 6100
166 1W7T 1 A, B, C, D GREEN FLUORESCENT PROTEIN THE CHROMOPHORE, GYS, IS PART OF THE PEPTIDE CHAIN BETWEEN RESIDUES 64 AND 68. 6100
167 1W7U 1 A, B, C, D GREEN FLUORESCENT PROTEIN THE CHROMOPHORE (GYS, 5-(1-AMINO-2-HYDROXYETHYL)-1-CARBOXYMETHYL-3-((P-HYDROXYPHENYL)-METHYLENE)-IMIDAZOL-2-ONE)IS PART OF THE PEPTIDE CHAIN BETWEEN RESIDUES 64 AND 68. 6100
168 4W6B 1 A, B fluorescent protein K26C 32630
169 3UFZ 1 A Green fluorescent protein UNP RESIDUES 2-229 6100
170 1HCJ 1 A, B, C, D GREEN FLUORESCENT PROTEIN 6100
171 3GJ1 1 A, B, C, D Green fluorescent protein 6100
172 4H47 1 A Green fluorescent protein 6100
173 1QYQ 1 A green-fluorescent protein 6100
174 3ST4 1 A, B, C Dreiklang 6100
175 1RMM 1 A SIGF1-GFP fusion protein 6100
176 2O2B 1 A Green fluorescent protein 6100
177 1Z1P 1 A green fluorescent protein F64L, S65T, Y66L 6100
178 3V3D 1 A Yellow fluorescent protein 6100
179 3GJ2 1 A, B, C, D Green fluorescent protein 6100
180 5BT0 1 A, B Green fluorescent protein 6100
181 1EMG 1 A PROTEIN (GREEN FLUORESCENT PROTEIN) 6100
182 4J88 1 A, B Green fluorescent protein 6100
183 1GFL 1 A, B GREEN FLUORESCENT PROTEIN 6100
184 2EMD 1 A GREEN FLUORESCENT PROTEIN 6100
185 2Q57 1 A Cerulean Green fluorescent protein 6100
186 1YHI 1 A Green Fluorescent Protein S65A, Y66S, R96A, F99S, M153T, V163A 6100
187 2AHA 1 A, B Green fluorescent protein GFP 6100
188 1JC1 1 A, B, C GREEN FLUORESCENT PROTEIN 6100
189 1QY3 1 A green-fluorescent protein residues 1-229 6100
190 5BTT 1 A Green fluorescent protein 6100
191 5BTT 2 B Green fluorescent protein 6100
192 1BFP 1 A BLUE FLUORESCENT PROTEIN 6100
193 3UG0 1 A Green fluorescent protein UNP RESIDUES 2-229 6100
194 2OKW 1 A, B, C, D, E, F Green fluorescent protein 6100
195 4XL5 1 A Green fluorescent protein 6100
196 4J89 1 A, B Green fluorescent protein 6100
197 1HUY 1 A GREEN FLUORESCENT PROTEIN 6100
198 1F0B 1 A GREEN FLUORESCENT PROTEIN 6100
199 1QXT 1 A green-fluorescent protein residues 1-229 6100
200 1EMK 1 A GREEN FLUORESCENT PROTEIN 6100
201 1JC0 1 A, B, C GREEN FLUORESCENT PROTEIN 6100
202 1EMB 1 A GREEN FLUORESCENT PROTEIN CHROMOPHORE CONTAINING PROTEIN 65 - 67 DENOTED AS CRO 6100
203 2AWL 1 A green fluorescent protein RESIDUES 1-229 6100
204 2HGY 1 A Green fluorescent protein 6100
205 4OGS 1 A, B Green fluorescent protein 6100
206 1F09 1 A GREEN FLUORESCENT PROTEIN 6100
207 1C4F 1 A GREEN FLUORESCENT PROTEIN 6100
208 1RRX 1 A SIGF1-GFP fusion protein contains 3-fluoro-tyrosine 6100
209 3K1K 1 A, B Green Fluorescent Protein 6100
210 2Q6P 1 A Green fluorescent protein mutant 3 6100
211 4KW8 1 A Green fluorescent protein The protein in this structure is a version of GFP called Emerald GFP 6100
212 2AH8 1 A, B Green fluorescent protein GFP 6100
213 1EMM 1 A GREEN FLUORESCENT PROTEIN 6100
214 2EMN 1 A GREEN FLUORESCENT PROTEIN 6100
215 1MYW 1 A Green fluorescent protein SEYFP-F46L variant residues 2-230 6100
216 5MA8 2 B, D Green fluorescent protein 6100
217 1EML 1 A GREEN FLUORESCENT PROTEIN 6100
218 1EMC 1 A, B, C, D GREEN FLUORESCENT PROTEIN 6100
219 2B3Q 1 A, B, C, D green fluorescent protein 6100
220 5MA6 1 A Green fluorescent protein 6100
221 1EMF 1 A GREEN FLUORESCENT PROTEIN 6100
222 2YFP 1 A PROTEIN (GREEN FLUORESCENT PROTEIN) 6100
223 3VHT 1 A Green fluorescent protein GFP domain 6100
224 5HZO 1 A, B Green fluorescent protein UNP residues 1-235 6100
225 5DPJ 1 A, B, C, D Green fluorescent protein 6100
226 5DU0 1 A, B, C, D Green fluorescent protein 6100
227 1CV7 1 A GREEN FLUORESCENT PROTEIN 6100
228 1B9C 1 A, B, C, D PROTEIN (GREEN FLUORESCENT PROTEIN) 6100
229 1YFP 1 A, B YELLOW FLUORESCENT PROTEIN 6100
230 5DPI 1 A, B, C, D, E, F Green fluorescent protein 6100
231 1EME 1 A GREEN FLUORESCENT PROTEIN 6100
232 5MFC 2 B, D (KR)4-Green fluorescent protein,Green fluorescent protein 6100
233 2OKY 1 A, B Green fluorescent protein 6100
234 4RYW 1 A, B, C NowGFP_conv
235 1YHG 1 A, B green fluorescent protein F64L, S65G, Y66S, V68G, F99S, M153T, V163A 6100
236 2EMO 1 A GREEN FLUORESCENT PROTEIN 6100
237 5DY6 1 A, B Green fluorescent protein 6100
238 1KP5 1 A, B Green Fluorescent Protein 6100
239 3OGO 1 A, B, C, D Green fluorescent protein 6100
240 5MAK 1 B, D Green fluorescent protein 6100
241 5HW9 1 A Green fluorescent protein 6100
242 1RM9 1 A avermectin-sensitive chloride channel GluCl beta/cyan fluorescent protein fusion 4-Fluorotryptophan-containing 6100
243 1RMP 1 A SIGF1-GFP fusion protein 6100
244 5LEM 3 C Green fluorescent protein 6100
245 4XVP 1 A, B, C Green fluorescent protein 6100
246 4JFG 1 A, B, C, D, E, F, G, H Green fluorescent protein 6100
247 5LEL 3 C, F, I Green fluorescent protein 6100
248 1EMA 1 A GREEN FLUORESCENT PROTEIN THE PROTEIN CONTAINS SIX SE-METHIONINES. OF THESE, THE N-TERMINAL MET AND MET 233 ARE NOT PRESENT IN THE ENTRY 6100