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Crystal structure of GFP-Wrnip1 UBZ domain fusion protein in complex with ubiquitin
Sequence Clustering and Redundancy Reduction Results
3VHT
Sequence Clusters for the Sequence Entities in PDB 3VHT
Entity #1: Chains: A - Green fluorescent protein protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47359
95% 185 198 52
90% 197 235 20
70% 197 236 27
50% 198 237 44
40% 199 238 55
30% 359 423 15
Entity #2: Chains: B - Green fluorescent protein, ATPase WRNIP1 protein, length: 273 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45799
95% 1 1 32735
90% 1 1 31443
70% 1 1 28200
50% 1 1 24287
40% 1 1 21528
30% 1 1 18332
Entity #3: Chains: C - Ubiquitin protein, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 203 8
95% 102 250 10
90% 109 263 11
70% 115 275 16
50% 121 295 15
40% 132 316 18
30% 296 766 10
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.