Sequence Similarity Clusters for the Entities in PDB 3VHT

Entity #1 | Chains: A
Green fluorescent protein protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55829
95 % 206 227 68
90 % 218 264 35
70 % 221 268 45
50 % 222 269 79
40 % 223 270 99
30 % 406 483 15
Entity #2 | Chains: B
Green fluorescent protein, ATPase WRNIP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54022
95 % 1 1 38411
90 % 1 1 36769
70 % 3 4 10410
50 % 3 4 9391
40 % 3 4 8539
30 % 3 4 7484
Entity #3 | Chains: C
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 126 279 5
95 % 148 335 6
90 % 158 357 6
70 % 164 373 8
50 % 170 394 12
40 % 181 416 15
30 % 376 916 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.