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An Information Portal to 107620 Biological Macromolecular Structures

Crystal structure of GFP-Wrnip1 UBZ domain fusion protein in complex with ubiquitin
Sequence Clustering and Redundancy Reduction Results
3VHT
Sequence Clusters for the Sequence Entities in PDB 3VHT
Entity #1: Chains: A - Green fluorescent protein protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46702
95% 185 198 50
90% 197 235 20
70% 197 236 27
50% 198 237 43
40% 199 238 55
30% 356 419 15
Entity #2: Chains: B - Green fluorescent protein, ATPase WRNIP1 protein, length: 273 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 45149
95% 1 1 32241
90% 1 1 30985
70% 1 1 27859
50% 1 1 24013
40% 1 1 21289
30% 1 1 18131
Entity #3: Chains: C - Ubiquitin protein, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 79 198 9
95% 97 244 12
90% 104 257 11
70% 110 269 16
50% 116 289 17
40% 127 310 18
30% 290 759 10
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.