Sequence Similarity Clusters for the Entities in PDB 3VHT

Entity #1 | Chains: A
Green fluorescent protein protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 51968
95 % 194 212 68
90 % 208 252 20
70 % 211 256 30
50 % 212 257 59
40 % 213 258 76
30 % 387 460 15
Entity #2 | Chains: B
Green fluorescent protein, ATPase WRNIP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 50272
95 % 1 1 35801
90 % 1 1 34298
70 % 3 4 9659
50 % 3 4 8736
40 % 3 4 7982
30 % 3 4 7036
Entity #3 | Chains: C
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 97 239 5
95 % 117 291 9
90 % 124 304 10
70 % 132 325 8
50 % 138 345 14
40 % 149 366 16
30 % 325 840 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.