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An Information Portal to 110071 Biological Macromolecular Structures

Crystal structure of GFP-Wrnip1 UBZ domain fusion protein in complex with ubiquitin
Sequence Clustering and Redundancy Reduction Results
3VHT
Sequence Clusters for the Sequence Entities in PDB 3VHT
Entity #1: Chains: A - Green fluorescent protein protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47837
95% 185 198 67
90% 197 235 20
70% 198 237 27
50% 199 238 45
40% 200 239 55
30% 361 425 15
Entity #2: Chains: B - Green fluorescent protein, ATPase WRNIP1 protein, length: 273 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 46263
95% 1 1 33046
90% 1 1 31738
70% 1 1 28457
50% 1 1 24503
40% 1 1 21723
30% 1 1 18497
Entity #3: Chains: C - Ubiquitin protein, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 203 9
95% 103 251 10
90% 110 264 11
70% 116 276 16
50% 122 296 15
40% 133 317 18
30% 297 768 10
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.