Sequence Similarity Clusters for the Entities in PDB 3VHT

Entity #1 | Chains: A
Green fluorescent protein protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58344
95 % 206 229 73
90 % 218 267 37
70 % 221 271 47
50 % 222 272 82
40 % 223 273 99
30 % 408 488 17
Entity #2 | Chains: B
Green fluorescent protein,ATPase WRNIP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 56474
95 % 1 1 40194
90 % 1 1 38411
70 % 3 4 10992
50 % 3 4 9861
40 % 3 4 8976
30 % 3 4 7851
Entity #3 | Chains: C
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 141 311 6
95 % 172 380 5
90 % 186 407 6
70 % 194 427 8
50 % 200 448 12
40 % 211 472 16
30 % 431 1019 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.