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Crystal structure of GFP-Wrnip1 UBZ domain fusion protein in complex with ubiquitin
Sequence Clustering and Redundancy Reduction Results
3VHT
Sequence Clusters for the Sequence Entities in PDB 3VHT
Entity #1: Chains: A - Green fluorescent protein protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 44268
95% 184 197 33
90% 187 201 30
70% 187 202 41
50% 188 203 71
40% 189 204 91
30% 342 380 16
Entity #2: Chains: B - Green fluorescent protein, ATPase WRNIP1 protein, length: 273 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 42793
95% 1 1 30655
90% 1 1 29480
70% 1 1 26570
50% 1 1 22953
40% 1 1 20356
30% 1 1 17354
Entity #3: Chains: C - Ubiquitin protein, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 183 11
95% 86 220 16
90% 93 233 14
70% 99 245 17
50% 105 265 19
40% 116 286 24
30% 265 718 10
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.