Sequence Similarity Clusters for the Entities in PDB 3VHT

Entity #1 | Chains: A
Green fluorescent protein protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 60333
95 % 226 252 65 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 0.6
PDBFlex
90 % 239 292 36
70 % 243 297 28
50 % 244 298 76
40 % 254 311 88
30 % 435 522 17
Entity #2 | Chains: B
Green fluorescent protein,ATPase WRNIP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58406
95 % 1 1 41534
90 % 1 1 39646
70 % 3 4 11365
50 % 3 4 10188
40 % 3 4 9265
30 % 3 4 8109
Entity #3 | Chains: C
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 143 322 5
95 % 177 397 5 Flexibility: Low
Max RMSD: 5.8, Avg RMSD: 1.1
PDBFlex
90 % 191 424 6
70 % 200 447 8
50 % 206 468 11
40 % 217 492 15
30 % 441 1046 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures