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Crystal structure of GFP-Wrnip1 UBZ domain fusion protein in complex with ubiquitin
Sequence Clustering and Redundancy Reduction Results
3VHT
Sequence Clusters for the Sequence Entities in PDB 3VHT
Entity #1: Chains: A - Green fluorescent protein protein, length: 235 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 48620
95% 186 200 67
90% 200 240 21
70% 201 242 27
50% 202 243 46
40% 203 244 54
30% 365 431 15
Entity #2: Chains: B - Green fluorescent protein, ATPase WRNIP1 protein, length: 273 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 47028
95% 1 1 33576
90% 1 1 32214
70% 1 1 28860
50% 1 1 24836
40% 1 1 22018
30% 1 1 18736
Entity #3: Chains: C - Ubiquitin protein, length: 76 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 210 8
95% 106 259 10
90% 113 272 11
70% 119 284 15
50% 125 304 15
40% 136 325 17
30% 303 782 10
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.