Sequence Similarity Clusters for the Entities in PDB 3VHT

Entity #1 | Chains: A
Green fluorescent protein protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 54365
95 % 204 224 68
90 % 216 261 34
70 % 219 265 44
50 % 220 266 75
40 % 221 267 92
30 % 396 471 16
Entity #2 | Chains: B
Green fluorescent protein, ATPase WRNIP1 protein, length: 273 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52597
95 % 1 1 37378
90 % 1 1 35793
70 % 3 4 10168
50 % 3 4 9168
40 % 3 4 8351
30 % 3 4 7333
Entity #3 | Chains: C
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 124 277 4
95 % 146 333 5
90 % 153 346 6
70 % 162 368 8
50 % 168 389 12
40 % 179 411 15
30 % 368 902 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.